NKX6-1_1

 

 

 

 

A

C

G

T

 

Name

NKX6-1

1

2713

3310

4488

2427

 

TF group

homeodomain

2

0

4163

0

8774

 

Polypeptide used

DBD

3

8543

4395

319

1205

 

Ligand sequence

TGCGGG30NGGC

4

12938

0

0

0

 

Batch of SELEX experiment

AI

5

0

0

0

12938

 

Seed sequence

NYMATTAN

6

461

0

0

12938

 

Hamming distance of sequences to seed

1

7

12938

0

0

0

 

SELEX cycle

3

8

7141

1566

1019

3212

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

NKX6-1_2

 

 

 

 

A

C

G

T

 

Name

NKX6-1

1

403

695

734

381

 

TF group

homeodomain

2

0

573

0

1640

 

Polypeptide used

full

3

1407

805

0

195

 

Ligand sequence

TGAAAC20NAAA

4

2212

200

12

40

 

Batch of SELEX experiment

W

5

0

0

0

2212

 

Seed sequence

NYMATTAN

6

58

45

0

2212

 

Hamming distance of sequences to seed

1

7

2212

27

132

17

 

SELEX cycle

4

8

1450

294

142

327

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Nkx6-1_3

 

 

 

 

A

C

G

T

 

Name

Nkx6-1

1

502

705

732

457

 

TF group

homeodomain

2

47

903

104

1492

 

Polypeptide used

DBD

3

1482

913

105

167

 

Ligand sequence

TCGTGT20NGTT

4

2395

237

0

0

 

Batch of SELEX experiment

AC

5

0

0

0

2395

 

Seed sequence

NYMATTAN

6

30

553

109

2395

 

Hamming distance of sequences to seed

1

7

2395

213

209

0

 

SELEX cycle

2

8

1206

432

217

540

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764