NKX3-1_1

 

 

 

 

A

C

G

T

 

Name

NKX3-1

1

1038

677

564

286

 

TF group

homeodomain

2

432

2565

589

150

 

Polypeptide used

full

3

0

2565

0

204

 

Ligand sequence

TCCCTC20NCG

4

2565

75

51

116

 

Batch of SELEX experiment

AD

5

82

2565

0

27

 

Seed sequence

NCCACTTAA

6

12

30

4

2565

 

Hamming distance of sequences to seed

1

7

22

214

0

2565

 

SELEX cycle

3

8

2565

235

116

260

 

Number of repeats

monomeric

9

2565

756

1067

741

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Nkx3-1_2

 

 

 

 

A

C

G

T

 

Name

Nkx3-1

1

2438

991

1361

544

 

TF group

homeodomain

2

981

5335

1776

275

 

Polypeptide used

DBD

3

0

5335

10

336

 

Ligand sequence

TCTTAG20NATG

4

5335

28

10

88

 

Batch of SELEX experiment

AA

5

59

5335

9

9

 

Seed sequence

NCCACTTAA

6

0

1

0

5335

 

Hamming distance of sequences to seed

1

7

0

254

0

5335

 

SELEX cycle

4

8

5335

273

173

523

 

Number of repeats

monomeric

9

5335

1407

2132

1509

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764