|
|
NKX2-8_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NKX2-8 |
|
1 |
1855 |
3052 |
2905 |
222 |
|
TF group |
homeodomain |
|
2 |
77 |
8034 |
65 |
1987 |
|
Polypeptide used |
DBD |
|
3 |
8034 |
528 |
20 |
700 |
|
Ligand sequence |
TAGGCA20NCG |
|
4 |
84 |
8034 |
32 |
77 |
|
Batch of SELEX experiment |
Y |
|
5 |
0 |
17 |
0 |
8034 |
|
Seed sequence |
NCACTTNAN |
|
6 |
87 |
3634 |
16 |
8034 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2134 |
2227 |
3308 |
366 |
|
SELEX cycle |
4 |
|
8 |
8034 |
1072 |
1152 |
2254 |
|
Number of repeats |
monomeric |
|
9 |
2498 |
2022 |
2578 |
935 |
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
NKX2-8_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NKX2-8 |
|
1 |
1942 |
3529 |
2843 |
249 |
|
TF group |
homeodomain |
|
2 |
70 |
8562 |
0 |
2155 |
|
Polypeptide used |
full |
|
3 |
8562 |
595 |
0 |
516 |
|
Ligand sequence |
TGTTGC20NGTG |
|
4 |
14 |
8562 |
0 |
110 |
|
Batch of SELEX experiment |
AE |
|
5 |
0 |
91 |
0 |
8562 |
|
Seed sequence |
NCACTTNAN |
|
6 |
23 |
3197 |
0 |
8562 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1738 |
2267 |
4286 |
271 |
|
SELEX cycle |
4 |
|
8 |
8562 |
908 |
696 |
2158 |
|
Number of repeats |
monomeric |
|
9 |
3194 |
1964 |
2593 |
811 |
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|