NKX2-3_1

 

 

 

 

A

C

G

T

 

Name

NKX2-3

1

305

127

87

116

 

TF group

homeodomain

2

143

635

162

15

 

Polypeptide used

DBD

3

11

635

0

37

 

Ligand sequence

TGCTAC20NGA

4

635

7

0

38

 

Batch of SELEX experiment

Y

5

0

635

6

1

 

Seed sequence

NCCACTTRAN

6

0

0

21

635

 

Hamming distance of sequences to seed

1

7

0

40

17

635

 

SELEX cycle

4

8

293

88

342

36

 

Number of repeats

monomeric

9

635

75

70

161

 

Comment

 

10

287

174

137

37

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

NKX2-3_2

 

 

 

 

A

C

G

T

 

Name

NKX2-3

1

3572

2182

1989

1535

 

TF group

homeodomain

2

2025

9278

4499

140

 

Polypeptide used

full

3

38

9278

0

132

 

Ligand sequence

TGGAAT20NGA

4

9278

98

16

250

 

Batch of SELEX experiment

AE

5

8

9278

0

0

 

Seed sequence

NCCACTTRAN

6

0

0

18

9278

 

Hamming distance of sequences to seed

1

7

0

939

0

9278

 

SELEX cycle

4

8

4241

1451

5037

343

 

Number of repeats

monomeric

9

9278

917

1831

2437

 

Comment

 

10

3170

2754

2788

566

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764