|
|
NFIA_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NFIA |
|
1 |
470 |
1267 |
128 |
30043 |
|
TF group |
NFI |
|
2 |
0 |
16 |
180 |
31058 |
|
Polypeptide used |
full |
|
3 |
4 |
0 |
29751 |
5 |
|
Ligand sequence |
TACGTC20NTGC |
|
4 |
5 |
1 |
29676 |
5 |
|
Batch of SELEX experiment |
AA |
|
5 |
650 |
27932 |
2 |
12 |
|
Seed sequence |
TTGGCANNNTGCCAR |
|
6 |
19181 |
1725 |
2732 |
3817 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
6352 |
10039 |
4852 |
6378 |
|
SELEX cycle |
3 |
|
8 |
6807 |
6909 |
7148 |
6727 |
|
Number of repeats |
dimeric |
|
9 |
6465 |
4267 |
10806 |
6373 |
|
Comment |
|
|
10 |
4112 |
3042 |
2058 |
21894 |
|
Representative matrix |
yes |
|
11 |
11 |
8 |
29809 |
837 |
|
|
|
|
12 |
10 |
27483 |
5 |
9 |
|
|
|
|
13 |
8 |
27680 |
2 |
4 |
|
Source: |
|
|
14 |
24858 |
158 |
10 |
5 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
13049 |
59 |
11224 |
244 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
NFIA_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NFIA |
|
1 |
22969 |
22347 |
24321 |
22282 |
|
TF group |
NFI |
|
2 |
20706 |
14274 |
35089 |
23019 |
|
Polypeptide used |
full |
|
3 |
0 |
0 |
0 |
95496 |
|
Ligand sequence |
TACGTC20NTGC |
|
4 |
0 |
0 |
98253 |
0 |
|
Batch of SELEX experiment |
AA |
|
5 |
0 |
93597 |
0 |
0 |
|
Seed sequence |
NNTGCCAANN |
|
6 |
0 |
93394 |
0 |
0 |
|
Hamming distance of sequences to seed |
0 |
|
7 |
89071 |
0 |
0 |
0 |
|
SELEX cycle |
3 |
|
8 |
89418 |
0 |
0 |
0 |
|
Number of repeats |
monomeric |
|
9 |
23752 |
21852 |
29423 |
17410 |
|
Comment |
model generated using exact match to seed; dimeric
binding is favored heavily over this monomer; removed from network
representations |
|
10 |
27709 |
14439 |
16505 |
32052 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|