|
MSX1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MSX1 |
1 |
928 |
2206 |
2428 |
866 |
|
TF group |
homeodomain |
2 |
290 |
4305 |
144 |
2049 |
|
Polypeptide used |
DBD |
3 |
5087 |
544 |
459 |
339 |
|
Ligand sequence |
TGCGAA30NAGC |
4 |
5281 |
264 |
116 |
55 |
|
Batch of SELEX experiment |
AI |
5 |
25 |
25 |
21 |
6965 |
|
Seed sequence |
NYAATTAAAANNYAATTA |
6 |
619 |
611 |
86 |
6442 |
|
Hamming distance of sequences to seed |
2 |
7 |
5332 |
61 |
370 |
257 |
|
SELEX cycle |
3 |
8 |
4671 |
1025 |
1402 |
1667 |
|
Number of repeats |
dimeric |
9 |
4630 |
1501 |
1406 |
1644 |
|
Comment |
|
10 |
4383 |
1181 |
1523 |
2726 |
|
Representative matrix |
yes |
11 |
2915 |
722 |
840 |
1537 |
|
|
|
12 |
970 |
2506 |
2311 |
608 |
|
|
|
13 |
499 |
4627 |
159 |
1412 |
|
|
|
14 |
5279 |
380 |
798 |
156 |
|
|
|
15 |
5477 |
168 |
105 |
90 |
|
|
|
16 |
31 |
29 |
27 |
6788 |
|
Source: |
|
17 |
249 |
297 |
72 |
6617 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
5548 |
68 |
486 |
351 |
|
|
|
|
|
|
|
|
|
|
|
|
MSX1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MSX1 |
1 |
2178 |
5096 |
4166 |
1849 |
|
TF group |
homeodomain |
2 |
461 |
9087 |
93 |
4202 |
|
Polypeptide used |
DBD |
3 |
13289 |
396 |
380 |
76 |
|
Ligand sequence |
TGCGAA30NAGC |
4 |
13289 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
0 |
0 |
13289 |
|
Seed sequence |
NYAATTAN |
6 |
366 |
427 |
224 |
13289 |
|
Hamming distance of sequences to seed |
1 |
7 |
13289 |
25 |
206 |
467 |
|
SELEX cycle |
3 |
8 |
4658 |
2598 |
3719 |
2314 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
MSX1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MSX1 |
1 |
461 |
1324 |
787 |
501 |
|
TF group |
homeodomain |
2 |
82 |
2117 |
33 |
956 |
|
Polypeptide used |
full |
3 |
3073 |
332 |
139 |
16 |
|
Ligand sequence |
TGCTTA20NGA |
4 |
3073 |
107 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
0 |
0 |
31 |
3073 |
|
Seed sequence |
NYAATTAN |
6 |
63 |
205 |
251 |
3073 |
|
Hamming distance of sequences to seed |
1 |
7 |
3073 |
118 |
105 |
91 |
|
SELEX cycle |
3 |
8 |
855 |
814 |
945 |
460 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |