MSX1_d1

 

 

 

 

A

C

G

T

 

Name

MSX1

1

928

2206

2428

866

 

TF group

homeodomain

2

290

4305

144

2049

 

Polypeptide used

DBD

3

5087

544

459

339

 

Ligand sequence

TGCGAA30NAGC

4

5281

264

116

55

 

Batch of SELEX experiment

AI

5

25

25

21

6965

 

Seed sequence

NYAATTAAAANNYAATTA

6

619

611

86

6442

 

Hamming distance of sequences to seed

2

7

5332

61

370

257

 

SELEX cycle

3

8

4671

1025

1402

1667

 

Number of repeats

dimeric

9

4630

1501

1406

1644

 

Comment

 

10

4383

1181

1523

2726

 

Representative matrix

yes

11

2915

722

840

1537

 

 

 

12

970

2506

2311

608

 

 

 

13

499

4627

159

1412

 

 

 

14

5279

380

798

156

 

 

 

15

5477

168

105

90

 

 

 

16

31

29

27

6788

 

Source:

 

17

249

297

72

6617

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

5548

68

486

351

 

 

 

 

 

 

 

 

 

 

 

 

MSX1_m1

 

 

 

 

A

C

G

T

 

Name

MSX1

1

2178

5096

4166

1849

 

TF group

homeodomain

2

461

9087

93

4202

 

Polypeptide used

DBD

3

13289

396

380

76

 

Ligand sequence

TGCGAA30NAGC

4

13289

0

0

0

 

Batch of SELEX experiment

AI

5

0

0

0

13289

 

Seed sequence

NYAATTAN

6

366

427

224

13289

 

Hamming distance of sequences to seed

1

7

13289

25

206

467

 

SELEX cycle

3

8

4658

2598

3719

2314

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

MSX1_m2

 

 

 

 

A

C

G

T

 

Name

MSX1

1

461

1324

787

501

 

TF group

homeodomain

2

82

2117

33

956

 

Polypeptide used

full

3

3073

332

139

16

 

Ligand sequence

TGCTTA20NGA

4

3073

107

0

0

 

Batch of SELEX experiment

AE

5

0

0

31

3073

 

Seed sequence

NYAATTAN

6

63

205

251

3073

 

Hamming distance of sequences to seed

1

7

3073

118

105

91

 

SELEX cycle

3

8

855

814

945

460

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764