MGA_m1

 

 

 

 

A

C

G

T

 

Name

MGA

1

30489

1151

8873

4160

 

TF group

TBX

2

4310

3737

30489

1929

 

Polypeptide used

DBD

3

16

509

30489

104

 

Ligand sequence

TAGGGC20NGGT

4

12

3534

96

30489

 

Batch of SELEX experiment

Y

5

14

1

30489

11

 

Seed sequence

AGGTGTGA

6

1042

3089

381

30489

 

Hamming distance of sequences to seed

1

7

689

1753

30489

6465

 

SELEX cycle

3

8

30489

110

920

274

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

MGA_d1

 

 

 

 

A

C

G

T

 

Name

MGA

1

1210

11

154

59

 

TF group

TBX

2

194

121

1721

101

 

Polypeptide used

DBD

3

0

13

2043

1

 

Ligand sequence

TAGGGC20NGGT

4

1

198

2

2022

 

Batch of SELEX experiment

Y

5

1

1

2100

1

 

Seed sequence

AGGTGTKANNTMACACCT

6

80

201

9

1902

 

Hamming distance of sequences to seed

2

7

54

48

1402

556

 

SELEX cycle

3

8

1387

2

14

2

 

Number of repeats

dimeric

9

564

495

167

412

 

Comment

 

10

492

203

552

528

 

Representative matrix

yes

11

6

2

0

2139

 

 

 

12

530

948

18

48

 

 

 

13

1379

14

97

43

 

 

 

14

0

1515

0

0

 

 

 

15

1417

1

90

0

 

 

 

16

1

1551

11

1

 

Source:

 

17

26

1319

210

321

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

123

323

22

1751

 

 

 

 

 

 

 

 

 

 

 

 

MGA_d2

 

 

 

 

A

C

G

T

 

Name

MGA

1

995

1004

2587

324

 

TF group

TBX

2

29

120

3465

27

 

Polypeptide used

DBD

3

38

859

29

2623

 

Ligand sequence

TAGGGC20NGGT

4

7

2

3589

0

 

Batch of SELEX experiment

Y

5

348

704

56

3208

 

Seed sequence

GGYGTGANNNNTCACRCC

6

65

383

3299

507

 

Hamming distance of sequences to seed

2

7

2381

4

81

64

 

SELEX cycle

3

8

1835

186

297

295

 

Number of repeats

dimeric

9

1622

100

155

816

 

Comment

 

10

809

141

473

1711

 

Representative matrix

yes

11

545

225

424

2078

 

 

 

12

74

87

22

3606

 

 

 

13

617

2364

435

79

 

 

 

14

2373

8

431

162

 

 

 

15

3

2627

0

6

 

 

 

16

2145

63

460

2

 

Source:

 

17

14

2681

66

17

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

117

2375

726

1048