MEOX2_m1

 

 

 

 

A

C

G

T

 

Name

MEOX2

1

8099

3821

6833

5176

 

TF group

homeodomain

2

3262

8942

14987

2754

 

Polypeptide used

DBD

3

1469

5055

642

23930

 

Ligand sequence

TAGTTT30NTTT

4

23930

8988

3016

900

 

Batch of SELEX experiment

AI

5

23930

788

272

492

 

Seed sequence

NSTAATTANN

6

76

38

169

23930

 

Hamming distance of sequences to seed

1

7

1152

6039

4974

23930

 

SELEX cycle

3

8

23930

359

4099

1032

 

Number of repeats

monomeric

9

9634

3380

4086

6830

 

Comment

 

10

5918

7195

5708

5108

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

MEOX2_d1

 

 

 

 

A

C

G

T

 

Name

MEOX2

1

1118

1187

1727

2666

 

TF group

homeodomain

2

181

797

95

6699

 

Polypeptide used

DBD

3

6699

457

1241

135

 

Ligand sequence

TAGTTT30NTTT

4

6699

71

119

70

 

Batch of SELEX experiment

AI

5

44

42

147

6699

 

Seed sequence

NTAATTANNNTAATTAN

6

158

368

2018

6699

 

Hamming distance of sequences to seed

1

7

6699

30

939

169

 

SELEX cycle

4

8

1151

3108

1456

983

 

Number of repeats

dimeric

9

1173

1860

2871

794

 

Comment

 

10

999

1918

2727

1055

 

Representative matrix

no

11

216

820

85

6699

 

 

 

12

6699

1353

533

109

 

 

 

13

6699

218

146

73

 

 

 

14

50

49

106

6699

 

 

 

15

157

1048

1069

6699

 

Source:

 

16

6699

45

904

224

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

1954

2247

1792

706

 

 

 

 

 

 

 

 

 

 

 

 

MEOX2_d2

 

 

 

 

A

C

G

T

 

Name

MEOX2

1

1420

2884

2659

1186

 

TF group

homeodomain

2

459

1339

116

8150

 

Polypeptide used

DBD

3

4640

3510

129

326

 

Ligand sequence

TAGTTT30NTTT

4

8150

33

76

33

 

Batch of SELEX experiment

AI

5

42

27

65

8150

 

Seed sequence

NTMATCATCATTAN

6

292

8150

110

1417

 

Hamming distance of sequences to seed

1

7

8150

41

52

7

 

SELEX cycle

4

8

13

100

19

8150

 

Number of repeats

dimeric

9

2052

8150

15

119

 

Comment

 

10

8150

12

160

51

 

Representative matrix

yes

11

82

31

32

8150

 

 

 

12

309

1597

34

8150

 

Source:

 

13

8150

126

243

386

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

3606

918

1677

1949

 

 

 

 

 

 

 

 

 

 

 

 

Meox2_m2

 

 

 

 

A

C

G

T

 

Name

Meox2

1

1001

967

1395

1339

 

TF group

homeodomain

2

139

762

219

4702

 

Polypeptide used

DBD

3

4702

0

549

211

 

Ligand sequence

TACGTC20NTGC

4

4702

67

0

26

 

Batch of SELEX experiment

Z

5

0

236

51

4702

 

Seed sequence

NTAATKAN

6

28

287

1603

3099

 

Hamming distance of sequences to seed

1

7

4702

27

833

259

 

SELEX cycle

4

8

1121

1471

1173

937

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764