|
MEOX2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MEOX2 |
1 |
8099 |
3821 |
6833 |
5176 |
|
TF group |
homeodomain |
2 |
3262 |
8942 |
14987 |
2754 |
|
Polypeptide used |
DBD |
3 |
1469 |
5055 |
642 |
23930 |
|
Ligand sequence |
TAGTTT30NTTT |
4 |
23930 |
8988 |
3016 |
900 |
|
Batch of SELEX experiment |
AI |
5 |
23930 |
788 |
272 |
492 |
|
Seed sequence |
NSTAATTANN |
6 |
76 |
38 |
169 |
23930 |
|
Hamming distance of sequences to seed |
1 |
7 |
1152 |
6039 |
4974 |
23930 |
|
SELEX cycle |
3 |
8 |
23930 |
359 |
4099 |
1032 |
|
Number of repeats |
monomeric |
9 |
9634 |
3380 |
4086 |
6830 |
|
Comment |
|
10 |
5918 |
7195 |
5708 |
5108 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
MEOX2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MEOX2 |
1 |
1118 |
1187 |
1727 |
2666 |
|
TF group |
homeodomain |
2 |
181 |
797 |
95 |
6699 |
|
Polypeptide used |
DBD |
3 |
6699 |
457 |
1241 |
135 |
|
Ligand sequence |
TAGTTT30NTTT |
4 |
6699 |
71 |
119 |
70 |
|
Batch of SELEX experiment |
AI |
5 |
44 |
42 |
147 |
6699 |
|
Seed sequence |
NTAATTANNNTAATTAN |
6 |
158 |
368 |
2018 |
6699 |
|
Hamming distance of sequences to seed |
1 |
7 |
6699 |
30 |
939 |
169 |
|
SELEX cycle |
4 |
8 |
1151 |
3108 |
1456 |
983 |
|
Number of repeats |
dimeric |
9 |
1173 |
1860 |
2871 |
794 |
|
Comment |
|
10 |
999 |
1918 |
2727 |
1055 |
|
Representative
matrix |
no |
11 |
216 |
820 |
85 |
6699 |
|
|
|
12 |
6699 |
1353 |
533 |
109 |
|
|
|
13 |
6699 |
218 |
146 |
73 |
|
|
|
14 |
50 |
49 |
106 |
6699 |
|
|
|
15 |
157 |
1048 |
1069 |
6699 |
|
Source: |
|
16 |
6699 |
45 |
904 |
224 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1954 |
2247 |
1792 |
706 |
|
|
|
|
|
|
|
|
|
|
|
|
MEOX2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
MEOX2 |
1 |
1420 |
2884 |
2659 |
1186 |
|
TF group |
homeodomain |
2 |
459 |
1339 |
116 |
8150 |
|
Polypeptide used |
DBD |
3 |
4640 |
3510 |
129 |
326 |
|
Ligand sequence |
TAGTTT30NTTT |
4 |
8150 |
33 |
76 |
33 |
|
Batch of SELEX experiment |
AI |
5 |
42 |
27 |
65 |
8150 |
|
Seed sequence |
NTMATCATCATTAN |
6 |
292 |
8150 |
110 |
1417 |
|
Hamming distance of sequences to seed |
1 |
7 |
8150 |
41 |
52 |
7 |
|
SELEX cycle |
4 |
8 |
13 |
100 |
19 |
8150 |
|
Number of repeats |
dimeric |
9 |
2052 |
8150 |
15 |
119 |
|
Comment |
|
10 |
8150 |
12 |
160 |
51 |
|
Representative matrix |
yes |
11 |
82 |
31 |
32 |
8150 |
|
|
|
12 |
309 |
1597 |
34 |
8150 |
|
Source: |
|
13 |
8150 |
126 |
243 |
386 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
3606 |
918 |
1677 |
1949 |
|
|
|
|
|
|
|
|
|
|
|
|
Meox2_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Meox2 |
1 |
1001 |
967 |
1395 |
1339 |
|
TF group |
homeodomain |
2 |
139 |
762 |
219 |
4702 |
|
Polypeptide used |
DBD |
3 |
4702 |
0 |
549 |
211 |
|
Ligand sequence |
TACGTC20NTGC |
4 |
4702 |
67 |
0 |
26 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
236 |
51 |
4702 |
|
Seed sequence |
NTAATKAN |
6 |
28 |
287 |
1603 |
3099 |
|
Hamming distance of sequences to seed |
1 |
7 |
4702 |
27 |
833 |
259 |
|
SELEX cycle |
4 |
8 |
1121 |
1471 |
1173 |
937 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |