MEIS3_m1

 

 

 

 

A

C

G

T

 

Name

MEIS3

1

1866

60

1788

3451

 

TF group

MEIS

2

465

383

260

7165

 

Polypeptide used

DBD

3

0

6

7165

0

 

Ligand sequence

TGGGTA20NGA

4

7165

20

455

53

 

Batch of SELEX experiment

Y

5

53

7165

8

160

 

Seed sequence

NTGACAGN

6

7165

8

468

145

 

Hamming distance of sequences to seed

1

7

1690

1889

7165

2094

 

SELEX cycle

2

8

960

2342

2888

975

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

MEIS3_d1

 

 

 

 

A

C

G

T

 

Name

MEIS3

1

311

218

152

3455

 

TF group

MEIS

2

52

194

3995

45

 

Polypeptide used

DBD

3

3286

42

242

315

 

Ligand sequence

TGGGTA20NGA

4

65

3664

40

84

 

Batch of SELEX experiment

Y

5

3533

13

112

29

 

Seed sequence

TGACAGSTGTCA

6

214

62

3609

822

 

Hamming distance of sequences to seed

2

7

192

1018

1952

52

 

SELEX cycle

2

8

24

109

14

3683

 

Number of repeats

dimeric

9

132

78

3995

144

 

Comment

 

10

776

292

89

3165

 

Representative matrix

no

11

73

3604

430

115

 

Source:

 

12

3329

176

328

336

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Meis3_m2

 

 

 

 

A

C

G

T

 

Name

Meis3

1

1199

1028

844

1829

 

TF group

MEIS

2

455

539

478

4901

 

Polypeptide used

DBD

3

0

0

4901

0

 

Ligand sequence

TGGACA20NGA

4

4901

450

40

0

 

Batch of SELEX experiment

AF

5

0

4901

44

0

 

Seed sequence

NTGACAN

6

4901

0

682

76

 

Hamming distance of sequences to seed

1

7

814

881

2421

785

 

SELEX cycle

2

 

 

 

 

 

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Meis3_d2

 

 

 

 

A

C

G

T

 

Name

Meis3

1

614

390

81

14126

 

TF group

MEIS

2

50

1187

16547

29

 

Polypeptide used

DBD

3

14038

79

426

902

 

Ligand sequence

TGGACA20NGA

4

74

15352

469

269

 

Batch of SELEX experiment

AF

5

14405

29

159

27

 

Seed sequence

TGACAGSTGTCA

6

1309

94

15042

2491

 

Hamming distance of sequences to seed

2

7

356

4998

6583

208

 

SELEX cycle

3

8

50

168

92

14623

 

Number of repeats

dimeric

9

254

123

16158

466

 

Comment

 

10

1288

568

182

13589

 

Representative matrix

no

11

53

15029

1451

231

 

Source:

 

12

13506

345

853

649

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764