Lhx8_d1

 

 

 

 

A

C

G

T

 

Name

Lhx8

1

153

469

196

291

 

TF group

homeodomain

2

114

517

39

1109

 

Polypeptide used

DBD

3

1109

100

474

28

 

Ligand sequence

TGCTCG40NCTC

4

1109

20

20

3

 

Batch of SELEX experiment

AI

5

21

25

18

1109

 

Seed sequence

NTAATTANNNNTAATTAN

6

40

613

172

1109

 

Hamming distance of sequences to seed

1

7

1109

34

330

75

 

SELEX cycle

3

8

360

243

403

103

 

Number of repeats

dimeric

9

176

468

237

228

 

Comment

 

10

307

295

361

147

 

Representative matrix

no

11

137

527

190

255

 

 

 

12

101

466

44

1109

 

 

 

13

1109

103

519

48

 

 

 

14

1109

2

15

2

 

 

 

15

14

32

21

1109

 

 

 

16

38

665

148

1109

 

Source:

 

17

1109

30

391

68

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

365

278

355

111

 

 

 

 

 

 

 

 

 

 

 

 

Lhx8_m1

 

 

 

 

A

C

G

T

 

Name

Lhx8

1

472

2588

925

1108

 

TF group

homeodomain

2

0

1996

0

5092

 

Polypeptide used

DBD

3

5092

160

1670

0

 

Ligand sequence

TGCTCG40NCTC

4

5092

0

0

0

 

Batch of SELEX experiment

AI

5

0

0

0

5092

 

Seed sequence

NTAATTAN

6

0

2083

88

5092

 

Hamming distance of sequences to seed

1

7

5092

0

1929

0

 

SELEX cycle

3

8

1366

1156

2156

414

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Lhx8_d2

 

 

 

 

A

C

G

T

 

Name

Lhx8

1

387

191

71

7071

 

TF group

homeodomain

2

3840

34

3231

50

 

Polypeptide used

DBD

3

7071

18

47

16

 

Ligand sequence

TGCTCG40NCTC

4

112

71

109

7071

 

Batch of SELEX experiment

AI

5

120

55

114

7071

 

Seed sequence

TRATTGCAATYA

6

892

70

7071

36

 

Hamming distance of sequences to seed

1

7

67

7071

45

618

 

SELEX cycle

3

8

7071

96

57

61

 

Number of repeats

dimeric

9

7071

98

39

57

 

Comment

 

10

24

59

24

7071

 

Representative matrix

no

11

68

3698

42

3373

 

Source:

 

12

7071

93

132

295

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764