|
|
LMX1B_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
LMX1B |
|
1 |
866 |
965 |
982 |
1287 |
|
TF group |
homeodomain |
|
2 |
537 |
1414 |
168 |
2687 |
|
Polypeptide used |
DBD |
|
3 |
4101 |
306 |
329 |
448 |
|
Ligand sequence |
TGAGGC20NGGA |
|
4 |
4101 |
60 |
43 |
182 |
|
Batch of SELEX experiment |
Z |
|
5 |
314 |
11 |
45 |
4101 |
|
Seed sequence |
NYAATTAN |
|
6 |
1349 |
410 |
417 |
4101 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
4101 |
94 |
20 |
489 |
|
SELEX cycle |
2 |
|
8 |
2104 |
662 |
809 |
525 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
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|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
18 |
|
|
|
|
|
|
|
|
19 |
|
|
|
|
|
|
|
|
20 |
|
|
|
|
|
|
|
|
21 |
|
|
|
|
|
|
|
|
22 |
|
|
|
|
|
|
|
|
23 |
|
|
|
|
|
|
|
|
|
LMX1B_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
LMX1B |
|
1 |
41 |
288 |
174 |
214 |
|
TF group |
homeodomain |
|
2 |
0 |
319 |
34 |
397 |
|
Polypeptide used |
full |
|
3 |
717 |
177 |
4 |
0 |
|
Ligand sequence |
TCGGAA20NAGT |
|
4 |
717 |
89 |
0 |
70 |
|
Batch of SELEX experiment |
AE |
|
5 |
0 |
8 |
0 |
717 |
|
Seed sequence |
NYAATTAN |
|
6 |
88 |
53 |
0 |
717 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
717 |
0 |
51 |
46 |
|
SELEX cycle |
3 |
|
8 |
299 |
211 |
75 |
131 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|