LHX9_m1

 

 

 

 

A

C

G

T

 

Name

LHX9

1

283

569

299

349

 

TF group

homeodomain

2

125

779

0

720

 

Polypeptide used

DBD

3

1500

290

93

142

 

Ligand sequence

TATTGT20NGTG

4

1500

0

0

0

 

Batch of SELEX experiment

Y

5

0

0

0

1500

 

Seed sequence

NYAATTAN

6

71

131

300

1500

 

Hamming distance of sequences to seed

1

7

1500

28

113

72

 

SELEX cycle

2

8

558

221

529

191

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

LHX9_d1

 

 

 

 

A

C

G

T

 

Name

LHX9

1

42

9

6

730

 

TF group

homeodomain

2

730

5

21

29

 

Polypeptide used

DBD

3

730

14

21

14

 

Ligand sequence

TATTGT20NGTG

4

22

67

60

730

 

Batch of SELEX experiment

Y

5

143

86

192

730

 

Seed sequence

TAATTRCYAATTA

6

214

6

516

11

 

Hamming distance of sequences to seed

1

7

147

730

0

76

 

SELEX cycle

3

8

11

379

3

351

 

Number of repeats

dimeric

9

730

171

21

107

 

Comment

 

10

730

26

25

12

 

Representative matrix

yes

11

0

14

3

730

 

 

 

12

10

26

6

730

 

Source:

 

13

730

4

21

34

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764