|
|
LHX2_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
LHX2 |
|
1 |
16039 |
10579 |
15546 |
6251 |
|
TF group |
homeodomain |
|
2 |
3769 |
48415 |
6413 |
8481 |
|
Polypeptide used |
DBD |
|
3 |
633 |
15833 |
67 |
48415 |
|
Ligand sequence |
TCCAGT30NGAC |
|
4 |
48415 |
6090 |
288 |
621 |
|
Batch of SELEX experiment |
AI |
|
5 |
48415 |
0 |
63 |
0 |
|
Seed sequence |
NCTAATTANN |
|
6 |
0 |
0 |
0 |
48415 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
259 |
1120 |
2834 |
48415 |
|
SELEX cycle |
4 |
|
8 |
48415 |
23 |
8137 |
520 |
|
Number of repeats |
monomeric |
|
9 |
19244 |
6815 |
15319 |
7038 |
|
Comment |
|
|
10 |
7653 |
16953 |
11964 |
11845 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
LHX2_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
LHX2 |
|
1 |
1361 |
27893 |
1421 |
39447 |
|
TF group |
homeodomain |
|
2 |
52013 |
10100 |
2909 |
2307 |
|
Polypeptide used |
DBD |
|
3 |
55533 |
601 |
2439 |
1133 |
|
Ligand sequence |
TCCAGT30NGAC |
|
4 |
1221 |
1008 |
1662 |
60411 |
|
Batch of SELEX experiment |
AI |
|
5 |
1762 |
2304 |
1369 |
60102 |
|
Seed sequence |
YAATTANNCTAATTR |
|
6 |
51597 |
708 |
8773 |
2102 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
22008 |
22559 |
10793 |
11491 |
|
SELEX cycle |
4 |
|
8 |
17844 |
16843 |
33124 |
6021 |
|
Number of repeats |
dimeric |
|
9 |
6226 |
68235 |
8871 |
12571 |
|
Comment |
|
|
10 |
3335 |
3643 |
595 |
57114 |
|
Representative matrix |
yes |
|
11 |
55694 |
1665 |
1321 |
828 |
|
|
|
|
12 |
56625 |
326 |
711 |
399 |
|
|
|
|
13 |
596 |
1296 |
475 |
59072 |
|
Source: |
|
|
14 |
2045 |
1391 |
11648 |
56331 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
38656 |
333 |
26176 |
1209 |
|
|
|