|
|
LBX2_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
LBX2 |
|
1 |
9 |
26 |
11 |
3 |
|
TF group |
homeodomain |
|
2 |
11 |
16 |
25 |
125 |
|
Polypeptide used |
DBD |
|
3 |
8 |
20 |
17 |
10 |
|
Ligand sequence |
TAATTC20NTTA |
|
4 |
69 |
4 |
128 |
15 |
|
Batch of SELEX experiment |
Y |
|
5 |
100 |
8 |
11 |
5 |
|
Seed sequence |
AATTGGCCAATTA |
|
6 |
28 |
40 |
21 |
30 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
1 |
18 |
12 |
4 |
|
SELEX cycle |
4 |
|
8 |
4 |
20 |
10 |
58 |
|
Number of repeats |
dimeric |
|
9 |
8 |
1 |
4 |
1 |
|
Comment |
|
|
10 |
9 |
0 |
3 |
1 |
|
Representative matrix |
yes |
|
11 |
0 |
2 |
3 |
11 |
|
|
|
|
12 |
0 |
3 |
4 |
15 |
|
Source: |
|
|
13 |
8 |
0 |
1 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
LBX2_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
LBX2 |
|
1 |
809 |
739 |
832 |
616 |
|
TF group |
homeodomain |
|
2 |
366 |
1437 |
477 |
715 |
|
Polypeptide used |
DBD |
|
3 |
157 |
1634 |
109 |
1362 |
|
Ligand sequence |
TAATTC20NTTA |
|
4 |
2996 |
338 |
325 |
57 |
|
Batch of SELEX experiment |
Y |
|
5 |
2996 |
290 |
130 |
89 |
|
Seed sequence |
NNYAATTANN |
|
6 |
0 |
29 |
118 |
2996 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
150 |
258 |
293 |
2996 |
|
SELEX cycle |
2 |
|
8 |
2996 |
34 |
106 |
148 |
|
Number of repeats |
monomeric |
|
9 |
990 |
434 |
1135 |
438 |
|
Comment |
|
|
10 |
722 |
977 |
737 |
560 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|