|
ISX_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ISX |
1 |
687 |
1148 |
735 |
1752 |
|
TF group |
homeodomain |
2 |
131 |
65 |
61 |
4323 |
|
Polypeptide used |
DBD |
3 |
4323 |
38 |
136 |
296 |
|
Ligand sequence |
TATTTA20NCG |
4 |
4323 |
121 |
170 |
32 |
|
Batch of SELEX experiment |
Y |
5 |
351 |
557 |
376 |
4323 |
|
Seed sequence |
NTAATYTAATTAN |
6 |
28 |
2948 |
275 |
1375 |
|
Hamming distance of sequences to seed |
1 |
7 |
22 |
684 |
317 |
4323 |
|
SELEX cycle |
3 |
8 |
4323 |
19 |
23 |
10 |
|
Number of repeats |
dimeric |
9 |
4323 |
16 |
7 |
2 |
|
Comment |
|
10 |
0 |
16 |
2 |
4323 |
|
Representative matrix |
yes |
11 |
10 |
4 |
11 |
4323 |
|
|
|
12 |
4323 |
6 |
77 |
86 |
|
Source: |
|
13 |
1653 |
739 |
1269 |
662 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ISX_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ISX |
1 |
2059 |
9764 |
2902 |
4429 |
|
TF group |
homeodomain |
2 |
878 |
11027 |
283 |
8127 |
|
Polypeptide used |
DBD |
3 |
19154 |
867 |
286 |
571 |
|
Ligand sequence |
TATTTA20NCG |
4 |
19154 |
175 |
0 |
72 |
|
Batch of SELEX experiment |
Y |
5 |
0 |
0 |
0 |
19154 |
|
Seed sequence |
NYAATTAN |
6 |
380 |
458 |
248 |
19154 |
|
Hamming distance of sequences to seed |
1 |
7 |
19154 |
143 |
68 |
744 |
|
SELEX cycle |
2 |
8 |
7187 |
3922 |
5442 |
2603 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ISX_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ISX |
1 |
318 |
863 |
364 |
520 |
|
TF group |
homeodomain |
2 |
10 |
1003 |
0 |
1061 |
|
Polypeptide used |
full |
3 |
2065 |
48 |
5 |
24 |
|
Ligand sequence |
TGAGTG20NTGA |
4 |
2065 |
16 |
0 |
10 |
|
Batch of SELEX experiment |
AE |
5 |
0 |
0 |
0 |
2065 |
|
Seed sequence |
NYAATTAN |
6 |
0 |
0 |
24 |
2065 |
|
Hamming distance of sequences to seed |
1 |
7 |
2065 |
0 |
0 |
49 |
|
SELEX cycle |
2 |
8 |
770 |
307 |
704 |
283 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |