|
|
IRF8_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
IRF8 |
|
1 |
3515 |
2220 |
1114 |
2438 |
|
TF group |
IRF |
|
2 |
1243 |
9288 |
411 |
2536 |
|
Polypeptide used |
DBD |
|
3 |
337 |
27 |
9288 |
19 |
|
Ligand sequence |
TGGCGG20NGCT |
|
4 |
9288 |
54 |
32 |
20 |
|
Batch of SELEX experiment |
Z |
|
5 |
9288 |
4 |
11 |
269 |
|
Seed sequence |
NCGAAACCGAAACY |
|
6 |
9288 |
5 |
1 |
32 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
556 |
9288 |
1442 |
436 |
|
SELEX cycle |
3 |
|
8 |
155 |
9288 |
7 |
3639 |
|
Number of repeats |
dimeric |
|
9 |
147 |
4 |
9288 |
0 |
|
Comment |
|
|
10 |
9288 |
58 |
12 |
2 |
|
Representative matrix |
no |
|
11 |
9288 |
2 |
32 |
599 |
|
|
|
|
12 |
9288 |
6 |
11 |
109 |
|
Source: |
|
|
13 |
354 |
9288 |
1756 |
153 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
945 |
3786 |
95 |
5501 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
IRF8_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
IRF8 |
|
1 |
1309 |
1996 |
571 |
2002 |
|
TF group |
IRF |
|
2 |
63 |
5878 |
19 |
884 |
|
Polypeptide used |
full |
|
3 |
3 |
0 |
5878 |
2 |
|
Ligand sequence |
TCCCCT20NCCC |
|
4 |
5878 |
2 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
|
5 |
5878 |
0 |
0 |
33 |
|
Seed sequence |
NCGAAACCGAAACT |
|
6 |
5878 |
0 |
0 |
3 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
54 |
5878 |
580 |
6 |
|
SELEX cycle |
4 |
|
8 |
6 |
5878 |
0 |
1228 |
|
Number of repeats |
dimeric |
|
9 |
0 |
0 |
5878 |
0 |
|
Comment |
|
|
10 |
5878 |
0 |
3 |
0 |
|
Representative
matrix |
no |
|
11 |
5878 |
0 |
2 |
68 |
|
|
|
|
12 |
5878 |
5 |
0 |
0 |
|
Source: |
|
|
13 |
11 |
5878 |
1061 |
15 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
321 |
1454 |
8 |
5878 |
|
|
|