|
|
IRF7_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
IRF7 |
|
1 |
373 |
323 |
71 |
191 |
|
TF group |
IRF |
|
2 |
97 |
957 |
50 |
46 |
|
Polypeptide used |
DBD |
|
3 |
36 |
67 |
957 |
90 |
|
Ligand sequence |
TATCGC20NGCG |
|
4 |
957 |
3 |
1 |
0 |
|
Batch of SELEX experiment |
AC |
|
5 |
957 |
0 |
0 |
1 |
|
Seed sequence |
NCGAAANYGAAACY |
|
6 |
957 |
2 |
1 |
1 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
279 |
156 |
505 |
17 |
|
SELEX cycle |
3 |
|
8 |
8 |
582 |
2 |
375 |
|
Number of repeats |
dimeric |
|
9 |
30 |
3 |
957 |
7 |
|
Comment |
|
|
10 |
957 |
16 |
4 |
5 |
|
Representative matrix |
yes |
|
11 |
957 |
3 |
3 |
1 |
|
|
|
|
12 |
957 |
10 |
7 |
41 |
|
Source: |
|
|
13 |
1184 |
957 |
1235 |
301 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
160 |
153 |
31 |
804 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
IRF7_t1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
IRF7 |
|
1 |
5101 |
1260 |
3384 |
852 |
|
TF group |
IRF |
|
2 |
8486 |
119 |
721 |
1129 |
|
Polypeptide used |
DBD |
|
3 |
8486 |
983 |
444 |
1416 |
|
Ligand sequence |
TATCGC20NGCG |
|
4 |
2837 |
2007 |
1444 |
2198 |
|
Batch of SELEX experiment |
AC |
|
5 |
1149 |
8486 |
808 |
411 |
|
Seed sequence |
RAANCGAAAWTCGNTTY |
|
6 |
428 |
3 |
8486 |
12 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
8486 |
1 |
23 |
1 |
|
SELEX cycle |
3 |
|
8 |
8486 |
4 |
3 |
77 |
|
Number of repeats |
trimeric |
|
9 |
8486 |
2 |
3 |
44 |
|
Comment |
|
|
10 |
5166 |
839 |
14 |
3320 |
|
Representative matrix |
yes |
|
11 |
17 |
162 |
55 |
8486 |
|
|
|
|
12 |
90 |
8486 |
9 |
263 |
|
|
|
|
13 |
678 |
710 |
8486 |
612 |
|
|
|
|
14 |
2643 |
1785 |
1850 |
2208 |
|
|
|
|
15 |
1306 |
507 |
758 |
8486 |
|
Source: |
|
|
16 |
1269 |
816 |
161 |
8486 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
1224 |
3423 |
1139 |
5063 |
|
|
|