|
|
IRF5_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
IRF5 |
|
1 |
35 |
169 |
22 |
42 |
|
TF group |
IRF |
|
2 |
10 |
177 |
17 |
38 |
|
Polypeptide used |
full |
|
3 |
15 |
3 |
357 |
21 |
|
Ligand sequence |
TAACAA20NCG |
|
4 |
223 |
2 |
6 |
7 |
|
Batch of SELEX experiment |
AD |
|
5 |
224 |
5 |
4 |
44 |
|
Seed sequence |
CCGAAACCGAAACY |
|
6 |
225 |
0 |
5 |
1 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
1 |
180 |
0 |
4 |
|
SELEX cycle |
3 |
|
8 |
0 |
182 |
0 |
37 |
|
Number of repeats |
dimeric |
|
9 |
105 |
30 |
365 |
8 |
|
Comment |
|
|
10 |
224 |
11 |
7 |
1 |
|
Representative matrix |
no |
|
11 |
206 |
6 |
25 |
40 |
|
|
|
|
12 |
223 |
84 |
12 |
15 |
|
Source: |
|
|
13 |
29 |
171 |
25 |
22 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
22 |
80 |
23 |
157 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
IRF5_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
IRF5 |
|
1 |
819 |
439 |
147 |
440 |
|
TF group |
IRF |
|
2 |
1844 |
177 |
158 |
115 |
|
Polypeptide used |
full |
|
3 |
388 |
1844 |
181 |
351 |
|
Ligand sequence |
TAACAA20NCG |
|
4 |
59 |
1844 |
1 |
34 |
|
Batch of SELEX experiment |
AD |
|
5 |
9 |
11 |
1844 |
0 |
|
Seed sequence |
NACCGAAACYN |
|
6 |
1844 |
0 |
4 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1844 |
0 |
7 |
219 |
|
SELEX cycle |
3 |
|
8 |
1844 |
28 |
0 |
0 |
|
Number of repeats |
monomeric |
|
9 |
38 |
1844 |
93 |
13 |
|
Comment |
|
|
10 |
106 |
973 |
45 |
871 |
|
Representative
matrix |
yes |
|
11 |
982 |
398 |
266 |
198 |
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|