Hoxd9_1

 

 

 

 

A

C

G

T

 

Name

Hoxd9

1

67

202

148

30

 

TF group

homeodomain

2

77

202

0

54

 

Polypeptide used

DBD

3

100

202

6

0

 

Ligand sequence

TCCTAA20NCG

4

202

0

53

27

 

Batch of SELEX experiment

Z

5

0

14

0

202

 

Seed sequence

CCCATAAAN

6

202

30

0

113

 

Hamming distance of sequences to seed

1

7

202

35

0

11

 

SELEX cycle

4

8

202

11

0

35

 

Number of repeats

monomeric

9

135

29

31

7

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxd9_2

 

 

 

 

A

C

G

T

 

Name

Hoxd9

1

75

44

194

9

 

TF group

homeodomain

2

24

275

12

194

 

Polypeptide used

DBD

3

194

77

36

0

 

Ligand sequence

TCCTAA20NCG

4

194

2

31

5

 

Batch of SELEX experiment

Z

5

13

7

7

194

 

Seed sequence

GTAATWAAAN

6

99

3

0

95

 

Hamming distance of sequences to seed

1

7

194

2

0

17

 

SELEX cycle

4

8

194

7

0

7

 

Number of repeats

monomeric

9

194

26

40

44

 

Comment

 

10

83

28

19

65

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxd9_3

 

 

 

 

A

C

G

T

 

Name

Hoxd9

1

92

111

170

1

 

TF group

homeodomain

2

13

52

20

170

 

Polypeptide used

DBD

3

29

170

0

42

 

Ligand sequence

TCCTAA20NCG

4

70

7

170

11

 

Batch of SELEX experiment

Z

5

7

7

19

170

 

Seed sequence

GTCGTAAAN

6

170

0

0

58

 

Hamming distance of sequences to seed

1

7

170

4

3

10

 

SELEX cycle

4

8

170

7

0

0

 

Number of repeats

monomeric

9

95

28

21

26

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764