Hoxa11_1

 

 

 

 

A

C

G

T

 

Name

Hoxa11

1

178

108

307

111

 

TF group

homeodomain

2

296

255

704

3

 

Polypeptide used

DBD

3

1

28

16

704

 

Ligand sequence

TCCCCT20NCG

4

30

704

0

36

 

Batch of SELEX experiment

Z

5

250

2

704

7

 

Seed sequence

NGTCGTWAAANN

6

14

1

3

704

 

Hamming distance of sequences to seed

1

7

489

3

13

215

 

SELEX cycle

4

8

704

0

2

31

 

Number of repeats

monomeric

9

704

27

3

40

 

Comment

 

10

704

159

117

197

 

Representative matrix

no

11

179

164

150

211

 

Source:

 

12

139

110

112

343

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxa11_2

 

 

 

 

A

C

G

T

 

Name

Hoxa11

1

102

75

160

67

 

TF group

homeodomain

2

156

210

404

128

 

Polypeptide used

DBD

3

0

213

4

190

 

Ligand sequence

TCCCCT20NCG

4

404

417

75

30

 

Batch of SELEX experiment

Z

5

404

93

61

1

 

Seed sequence

NGYAATWAAAN

6

30

0

0

404

 

Hamming distance of sequences to seed

1

7

246

14

4

157

 

SELEX cycle

4

8

404

0

0

23

 

Number of repeats

monomeric

9

404

31

4

1

 

Comment

 

10

404

137

76

93

 

Representative matrix

no

11

114

102

72

116

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764