Hic1_d1

 

 

 

 

A

C

G

T

 

Name

Hic1

1

1126

155

1647

140

 

TF group

C2H2

2

1

12

14

3293

 

Polypeptide used

DBD

3

134

7

3160

2

 

Ligand sequence

TCATCA20NCTA

4

0

2889

29

1

 

Batch of SELEX experiment

Z

5

6

2835

1

1

 

Seed sequence

RTGCCANCYNRTGCCMNC

6

2332

290

9

109

 

Hamming distance of sequences to seed

2

7

952

767

1140

107

 

SELEX cycle

4

8

53

2770

100

116

 

Number of repeats

dimeric

9

194

1851

247

878

 

Comment

 

10

185

965

591

1364

 

Representative matrix

yes

11

1609

35

1210

55

 

 

 

12

0

12

5

3342

 

 

 

13

137

12

3180

1

 

 

 

14

0

2887

49

6

 

 

 

15

2

2845

40

1

 

 

 

16

2022

524

9

70

 

Source:

 

17

1251

602

694

336

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

89

2612

80

219

 

 

 

 

 

 

 

 

 

 

 

 

Hic1_m1

 

 

 

 

A

C

G

T

 

Name

Hic1

1

6337

719

4670

666

 

TF group

C2H2

2

62

422

73

11007

 

Polypeptide used

DBD

3

950

588

11007

183

 

Ligand sequence

TCATCA20NCTA

4

50

11007

121

0

 

Batch of SELEX experiment

Z

5

88

11007

31

68

 

Seed sequence

RTGCCMNCN

6

9008

1999

3

317

 

Hamming distance of sequences to seed

1

7

6140

1986

2267

614

 

SELEX cycle

4

8

1220

11007

1629

1488

 

Number of repeats

monomer

9

1610

4822

1884

2692

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764