HSFY2_dd1

 

 

 

 

A

C

G

T

 

Name

HSFY2

1

102

40

32

266

 

TF group

HSF

2

58

7

15

266

 

Polypeptide used

DBD

3

42

266

26

2

 

Ligand sequence

TCAGAG20NAGA

4

1

25

266

50

 

Batch of SELEX experiment

Y

5

266

18

2

9

 

Seed sequence

TTCGAANNNTTCGAA

6

266

17

11

83

 

Hamming distance of sequences to seed

1

7

92

80

35

59

 

SELEX cycle

3

8

70

106

62

27

 

Number of repeats

dimer of dimers

9

106

32

112

15

 

Comment

 

10

124

32

26

266

 

Representative matrix

yes

11

18

14

5

266

 

 

 

12

43

266

14

1

 

 

 

13

0

57

266

59

 

Source:

 

14

266

25

8

18

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

266

36

29

88

 

 

 

 

 

 

 

 

 

 

 

 

HSFY2_d1

 

 

 

 

A

C

G

T

 

Name

HSFY2

1

1877

906

792

4071

 

TF group

HSF

2

2499

105

593

5948

 

Polypeptide used

DBD

3

185

158

87

5948

 

Ligand sequence

TCAGAG20NAGA

4

1236

5948

794

13

 

Batch of SELEX experiment

Y

5

0

0

5948

27

 

Seed sequence

WTTCGAAYG

6

5948

7

7

57

 

Hamming distance of sequences to seed

1

7

5948

35

184

192

 

SELEX cycle

3

8

10

4409

95

1539

 

Number of repeats

dimeric

9

751

989

5948

774

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

HSFY2_dd2

 

 

 

 

A

C

G

T

 

Name

HSFY2

1

359

208

266

1526

 

TF group

HSF

2

203

119

151

1624

 

Polypeptide used

DBD

3

224

1399

206

39

 

Ligand sequence

TCAGAG20NAGA

4

49

165

1526

208

 

Batch of SELEX experiment

Y

5

1027

60

54

68

 

Seed sequence

TTCGAANNNTTCGAA

6

969

137

115

329

 

Hamming distance of sequences to seed

2

7

343

443

212

393

 

SELEX cycle

3

8

181

575

523

183

 

Number of repeats

dimer of dimers

9

457

137

583

192

 

Comment

 

10

305

192

88

1429

 

Representative matrix

no

11

84

48

58

1580

 

 

 

12

136

1391

102

17

 

 

 

13

11

251

1464

310

 

Source:

 

14

1034

118

60

96

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

959

235

124

303