HOXD13_1

 

 

 

 

A

C

G

T

 

Name

HOXD13

1

50

688

294

55

 

TF group

homeodomain

2

12

403

4

285

 

Polypeptide used

DBD

3

688

347

0

94

 

Ligand sequence

GTGCT14N

4

688

0

27

29

 

Batch of SELEX experiment

U

5

0

1

0

688

 

Seed sequence

CYAATAAAAN

6

688

0

0

110

 

Hamming distance of sequences to seed

1

7

688

3

0

4

 

SELEX cycle

4

8

688

1

0

0

 

Number of repeats

monomeric

9

688

75

34

56

 

Comment

 

10

243

207

73

165

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXD13_2

 

 

 

 

A

C

G

T

 

Name

HOXD13

1

52

194

493

160

 

TF group

homeodomain

2

29

899

69

0

 

Polypeptide used

DBD

3

6

2

8

899

 

Ligand sequence

GTGCT14N

4

24

899

1

110

 

Batch of SELEX experiment

U

5

196

0

899

0

 

Seed sequence

NCTCGTAAAAN

6

5

2

0

899

 

Hamming distance of sequences to seed

1

7

899

1

8

89

 

SELEX cycle

4

8

899

0

0

6

 

Number of repeats

monomeric

9

899

0

2

0

 

Comment

 

10

899

144

45

108

 

Representative matrix

no

11

265

292

62

280

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxd13_3

 

 

 

 

A

C

G

T

 

Name

Hoxd13

1

304

2106

1227

241

 

TF group

homeodomain

2

170

2106

0

1676

 

Polypeptide used

DBD

3

2106

523

0

480

 

Ligand sequence

TGATAA20NATA

4

2106

0

6

100

 

Batch of SELEX experiment

AC

5

0

1

4

2106

 

Seed sequence

CCAATAAAAN

6

2106

12

55

278

 

Hamming distance of sequences to seed

1

7

2106

0

0

42

 

SELEX cycle

4

8

2106

52

2

22

 

Number of repeats

monomeric

9

2106

582

165

417

 

Comment

 

10

730

640

183

554

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxd13_4

 

 

 

 

A

C

G

T

 

Name

Hoxd13

1

681

845

1202

971

 

TF group

homeodomain

2

413

3699

858

91

 

Polypeptide used

DBD

3

106

574

55

3699

 

Ligand sequence

TGATAA20NATA

4

1702

3699

70

753

 

Batch of SELEX experiment

AC

5

1488

0

2211

26

 

Seed sequence

NCTCRTAAAAN

6

0

2

3

3699

 

Hamming distance of sequences to seed

1

7

3699

13

28

959

 

SELEX cycle

4

8

3699

5

0

83

 

Number of repeats

monomeric

9

3699

14

41

102

 

Comment

 

10

3699

957

423

929

 

Representative matrix

no

11

1038

1298

374

989

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764