|
|
HOXD12_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXD12 |
|
1 |
156 |
311 |
1031 |
117 |
|
TF group |
homeodomain |
|
2 |
9 |
394 |
1 |
1031 |
|
Polypeptide used |
DBD |
|
3 |
1031 |
224 |
257 |
15 |
|
Ligand sequence |
TCAGTC20NCG |
|
4 |
1031 |
55 |
18 |
5 |
|
Batch of SELEX experiment |
Y |
|
5 |
133 |
9 |
0 |
1031 |
|
Seed sequence |
GTAATAAAA |
|
6 |
1031 |
7 |
3 |
177 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1031 |
0 |
0 |
8 |
|
SELEX cycle |
4 |
|
8 |
1031 |
51 |
17 |
26 |
|
Number of repeats |
monomeric |
|
9 |
1031 |
111 |
109 |
114 |
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
HOXD12_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXD12 |
|
1 |
629 |
155 |
525 |
58 |
|
TF group |
homeodomain |
|
2 |
485 |
387 |
1367 |
12 |
|
Polypeptide used |
DBD |
|
3 |
1 |
49 |
8 |
1367 |
|
Ligand sequence |
TCAGTC20NCG |
|
4 |
3 |
1367 |
5 |
0 |
|
Batch of SELEX experiment |
Y |
|
5 |
207 |
2 |
1367 |
0 |
|
Seed sequence |
NGTCGTAAAAN |
|
6 |
1 |
10 |
0 |
1367 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1367 |
0 |
2 |
222 |
|
SELEX cycle |
4 |
|
8 |
1367 |
0 |
3 |
0 |
|
Number of repeats |
monomeric |
|
9 |
1367 |
0 |
6 |
44 |
|
Comment |
|
|
10 |
1367 |
185 |
48 |
317 |
|
Representative
matrix |
no |
|
11 |
538 |
482 |
77 |
271 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|