HOXD11_1

 

 

 

 

A

C

G

T

 

Name

HOXD11

1

128

54

230

0

 

TF group

homeodomain

2

0

0

0

230

 

Polypeptide used

DBD

3

16

230

0

23

 

Ligand sequence

TCCGGC20NGGC

4

68

0

230

0

 

Batch of SELEX experiment

Y

5

8

0

0

230

 

Seed sequence

GTCGTWAAAN

6

175

0

0

56

 

Hamming distance of sequences to seed

1

7

230

0

0

3

 

SELEX cycle

4

8

230

4

0

7

 

Number of repeats

monomeric

9

230

29

28

71

 

Comment

 

10

88

51

23

69

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXD11_2

 

 

 

 

A

C

G

T

 

Name

HOXD11

1

34

6

44

21

 

TF group

homeodomain

2

61

40

105

23

 

Polypeptide used

DBD

3

9

47

8

58

 

Ligand sequence

TCCGGC20NGGC

4

105

80

11

6

 

Batch of SELEX experiment

Y

5

105

8

15

8

 

Seed sequence

NGYAATAAAA

6

8

7

4

105

 

Hamming distance of sequences to seed

1

7

105

6

4

38

 

SELEX cycle

4

8

105

1

6

3

 

Number of repeats

monomeric

9

105

3

5

5

 

Comment

 

10

105

22

21

16

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764