|
HOXD11_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXD11 |
1 |
128 |
54 |
230 |
0 |
|
TF group |
homeodomain |
2 |
0 |
0 |
0 |
230 |
|
Polypeptide used |
DBD |
3 |
16 |
230 |
0 |
23 |
|
Ligand sequence |
TCCGGC20NGGC |
4 |
68 |
0 |
230 |
0 |
|
Batch of SELEX experiment |
Y |
5 |
8 |
0 |
0 |
230 |
|
Seed sequence |
GTCGTWAAAN |
6 |
175 |
0 |
0 |
56 |
|
Hamming distance of sequences to seed |
1 |
7 |
230 |
0 |
0 |
3 |
|
SELEX cycle |
4 |
8 |
230 |
4 |
0 |
7 |
|
Number of repeats |
monomeric |
9 |
230 |
29 |
28 |
71 |
|
Comment |
|
10 |
88 |
51 |
23 |
69 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
HOXD11_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
HOXD11 |
1 |
34 |
6 |
44 |
21 |
|
TF group |
homeodomain |
2 |
61 |
40 |
105 |
23 |
|
Polypeptide used |
DBD |
3 |
9 |
47 |
8 |
58 |
|
Ligand sequence |
TCCGGC20NGGC |
4 |
105 |
80 |
11 |
6 |
|
Batch of SELEX experiment |
Y |
5 |
105 |
8 |
15 |
8 |
|
Seed sequence |
NGYAATAAAA |
6 |
8 |
7 |
4 |
105 |
|
Hamming distance of sequences to seed |
1 |
7 |
105 |
6 |
4 |
38 |
|
SELEX cycle |
4 |
8 |
105 |
1 |
6 |
3 |
|
Number of repeats |
monomeric |
9 |
105 |
3 |
5 |
5 |
|
Comment |
|
10 |
105 |
22 |
21 |
16 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |