HOXC13_1

 

 

 

 

A

C

G

T

 

Name

HOXC13

1

84

635

189

52

 

TF group

homeodomain

2

46

635

22

318

 

Polypeptide used

DBD

3

635

148

1

132

 

Ligand sequence

TCCCTC20NTCC

4

635

0

4

19

 

Batch of SELEX experiment

Y

5

2

2

2

635

 

Seed sequence

CCAATAAAAN

6

635

0

5

75

 

Hamming distance of sequences to seed

1

7

635

2

0

10

 

SELEX cycle

3

8

635

8

0

7

 

Number of repeats

monomeric

9

635

51

41

68

 

Comment

 

10

229

177

81

148

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXC13_2

 

 

 

 

A

C

G

T

 

Name

HOXC13

1

165

288

495

309

 

TF group

homeodomain

2

44

1257

58

13

 

Polypeptide used

DBD

3

4

21

5

1257

 

Ligand sequence

TCCCTC20NTCC

4

26

1257

10

132

 

Batch of SELEX experiment

Y

5

251

4

1257

4

 

Seed sequence

NCTCGTAAAAN

6

0

0

5

1257

 

Hamming distance of sequences to seed

1

7

1257

1

2

165

 

SELEX cycle

3

8

1257

4

2

8

 

Number of repeats

monomeric

9

1257

0

0

1

 

Comment

 

10

1257

173

89

205

 

Representative matrix

yes

11

389

358

147

362

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764