|
|
HOXC12_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXC12 |
|
1 |
942 |
610 |
3459 |
190 |
|
TF group |
homeodomain |
|
2 |
36 |
1352 |
12 |
2106 |
|
Polypeptide used |
DBD |
|
3 |
3459 |
555 |
512 |
118 |
|
Ligand sequence |
TCATGC20NGTA |
|
4 |
3459 |
46 |
309 |
57 |
|
Batch of SELEX experiment |
Y |
|
5 |
456 |
0 |
2 |
3459 |
|
Seed sequence |
GYAATAAAA |
|
6 |
3459 |
46 |
29 |
551 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3459 |
3 |
2 |
81 |
|
SELEX cycle |
4 |
|
8 |
3459 |
40 |
6 |
48 |
|
Number of repeats |
monomeric |
|
9 |
3459 |
381 |
247 |
354 |
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
HOXC12_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXC12 |
|
1 |
1450 |
259 |
2172 |
417 |
|
TF group |
homeodomain |
|
2 |
1260 |
708 |
4297 |
1 |
|
Polypeptide used |
DBD |
|
3 |
11 |
68 |
2 |
4297 |
|
Ligand sequence |
TCATGC20NGTA |
|
4 |
199 |
4297 |
12 |
163 |
|
Batch of SELEX experiment |
Y |
|
5 |
376 |
2 |
4297 |
0 |
|
Seed sequence |
NGTCGTAAAAN |
|
6 |
0 |
2 |
1 |
4297 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
4297 |
14 |
5 |
553 |
|
SELEX cycle |
4 |
|
8 |
4297 |
0 |
2 |
25 |
|
Number of repeats |
monomeric |
|
9 |
4297 |
13 |
0 |
29 |
|
Comment |
|
|
10 |
4297 |
636 |
269 |
515 |
|
Representative
matrix |
no |
|
11 |
1442 |
1139 |
372 |
1344 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|