HOXC11_1

 

 

 

 

A

C

G

T

 

Name

HOXC11

1

1604

635

1857

1028

 

TF group

homeodomain

2

2418

1073

5124

78

 

Polypeptide used

DBD

3

115

243

50

5124

 

Ligand sequence

TCACTA20NTCA

4

488

5124

36

564

 

Batch of SELEX experiment

AC

5

2514

31

5124

39

 

Seed sequence

NGTCGTWAAAN

6

12

13

0

5124

 

Hamming distance of sequences to seed

1

7

3364

34

19

1760

 

SELEX cycle

4

8

5124

8

27

282

 

Number of repeats

monomeric

9

5124

151

87

260

 

Comment

 

10

5124

1033

732

1763

 

Representative matrix

no

11

1658

1074

674

1718

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXC11_2

 

 

 

 

A

C

G

T

 

Name

HOXC11

1

2158

637

1710

1134

 

TF group

homeodomain

2

2499

1732

5639

971

 

Polypeptide used

DBD

3

197

2878

105

2761

 

Ligand sequence

TCACTA20NTCA

4

5639

3554

699

911

 

Batch of SELEX experiment

AC

5

5639

558

848

356

 

Seed sequence

NGYAATWAAAN

6

442

0

0

5639

 

Hamming distance of sequences to seed

1

7

3953

72

113

1686

 

SELEX cycle

4

8

5639

84

64

461

 

Number of repeats

monomeric

9

5639

344

92

282

 

Comment

 

10

5639

1080

769

1486

 

Representative matrix

no

11

2052

1299

831

1457

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXC11_3

 

 

 

 

A

C

G

T

 

Name

HOXC11

1

683

260

1110

406

 

TF group

homeodomain

2

1040

479

2460

0

 

Polypeptide used

full

3

38

41

22

2460

 

Ligand sequence

TGCGAA20NGA

4

57

2460

12

98

 

Batch of SELEX experiment

AF

5

569

0

2460

0

 

Seed sequence

NGTCGTWAAAN

6

12

0

0

2460

 

Hamming distance of sequences to seed

1

7

1784

6

25

676

 

SELEX cycle

4

8

2460

0

0

42

 

Number of repeats

monomeric

9

2460

43

17

22

 

Comment

 

10

2460

431

279

776

 

Representative matrix

no

11

707

628

384

741

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXC11_4

 

 

 

 

A

C

G

T

 

Name

HOXC11

1

384

137

336

164

 

TF group

homeodomain

2

283

246

1021

81

 

Polypeptide used

full

3

18

620

32

401

 

Ligand sequence

TGCGAA20NGA

4

1021

947

169

70

 

Batch of SELEX experiment

AF

5

1021

11

111

86

 

Seed sequence

NGYAATWAAAN

6

81

0

28

1021

 

Hamming distance of sequences to seed

1

7

803

58

13

219

 

SELEX cycle

4

8

1021

0

5

86

 

Number of repeats

monomeric

9

1021

68

0

43

 

Comment

 

10

1021

216

77

224

 

Representative matrix

no

11

382

266

177

197

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764