HOXC10_1

 

 

 

 

A

C

G

T

 

Name

HOXC10

1

1414

2362

1762

613

 

TF group

homeodomain

2

1133

2362

308

1142

 

Polypeptide used

DBD

3

1237

2362

89

507

 

Ligand sequence

TGGACA20NGA

4

2362

14

64

10

 

Batch of SELEX experiment

Y

5

74

18

0

2362

 

Seed sequence

CCCATWAAAN

6

1526

54

0

835

 

Hamming distance of sequences to seed

1

7

2362

0

3

77

 

SELEX cycle

3

8

2362

132

44

61

 

Number of repeats

monomeric

9

2362

551

237

447

 

Comment

 

10

990

626

181

566

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXC10_2

 

 

 

 

A

C

G

T

 

Name

HOXC10

1

1065

1329

3755

432

 

TF group

homeodomain

2

83

3545

22

3755

 

Polypeptide used

DBD

3

3755

2624

589

107

 

Ligand sequence

TGGACA20NGA

4

3755

284

317

51

 

Batch of SELEX experiment

Y

5

265

0

0

3755

 

Seed sequence

GTAATWAAAN

6

2423

45

68

1332

 

Hamming distance of sequences to seed

1

7

3755

14

31

164

 

SELEX cycle

3

8

3755

319

110

238

 

Number of repeats

monomeric

9

3755

856

846

932

 

Comment

 

10

1444

798

549

964

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXC10_3

 

 

 

 

A

C

G

T

 

Name

HOXC10

1

1495

1044

3211

15

 

TF group

homeodomain

2

26

245

0

3211

 

Polypeptide used

DBD

3

315

3211

12

152

 

Ligand sequence

TGGACA20NGA

4

2638

6

3211

24

 

Batch of SELEX experiment

Y

5

27

0

0

3211

 

Seed sequence

GTCGTWAAAN

6

2165

5

4

1047

 

Hamming distance of sequences to seed

1

7

3211

3

5

102

 

SELEX cycle

3

8

3211

76

86

187

 

Number of repeats

monomeric

9

3211

551

532

1069

 

Comment

 

10

988

679

453

1092

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxc10_4

 

 

 

 

A

C

G

T

 

Name

Hoxc10

1

298

167

788

0

 

TF group

homeodomain

2

6

29

0

788

 

Polypeptide used

DBD

3

78

788

12

53

 

Ligand sequence

TATAGA20NGAG

4

791

0

788

0

 

Batch of SELEX experiment

Z

5

0

0

1

788

 

Seed sequence

GTCGTWAAAN

6

576

10

4

212

 

Hamming distance of sequences to seed

1

7

788

0

0

22

 

SELEX cycle

4

8

788

27

0

23

 

Number of repeats

monomeric

9

788

100

60

157

 

Comment

 

10

371

160

50

207

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxc10_5

 

 

 

 

A

C

G

T

 

Name

Hoxc10

1

851

593

3470

333

 

TF group

homeodomain

2

66

1668

19

1802

 

Polypeptide used

DBD

3

3470

1190

360

248

 

Ligand sequence

TATAGA20NGAG

4

3470

106

93

25

 

Batch of SELEX experiment

Z

5

110

0

27

3470

 

Seed sequence

GYAATWAAAN

6

2602

11

45

868

 

Hamming distance of sequences to seed

1

7

3470

0

0

40

 

SELEX cycle

4

8

3470

47

57

116

 

Number of repeats

monomeric

9

3470

335

294

454

 

Comment

 

10

1644

714

362

749

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764