|
|
HOXB13_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXB13 |
|
1 |
277 |
2781 |
518 |
161 |
|
TF group |
homeodomain |
|
2 |
116 |
2781 |
14 |
691 |
|
Polypeptide used |
DBD |
|
3 |
2781 |
1000 |
12 |
521 |
|
Ligand sequence |
TGCCTG20NGA |
|
4 |
2781 |
22 |
38 |
104 |
|
Batch of SELEX experiment |
Y |
|
5 |
0 |
7 |
0 |
2781 |
|
Seed sequence |
CCAATAAAAN |
|
6 |
2781 |
22 |
26 |
304 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2781 |
0 |
0 |
17 |
|
SELEX cycle |
3 |
|
8 |
2781 |
77 |
1 |
18 |
|
Number of repeats |
monomeric |
|
9 |
2781 |
550 |
168 |
345 |
|
Comment |
|
|
10 |
988 |
1014 |
192 |
587 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
HOXB13_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXB13 |
|
1 |
277 |
861 |
862 |
384 |
|
TF group |
homeodomain |
|
2 |
122 |
2384 |
142 |
5 |
|
Polypeptide used |
DBD |
|
3 |
9 |
135 |
6 |
2384 |
|
Ligand sequence |
TGCCTG20NGA |
|
4 |
79 |
2384 |
11 |
272 |
|
Batch of SELEX experiment |
Y |
|
5 |
612 |
1 |
2384 |
9 |
|
Seed sequence |
NCTCGTAAAAN |
|
6 |
2 |
6 |
0 |
2384 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2384 |
9 |
6 |
433 |
|
SELEX cycle |
3 |
|
8 |
2384 |
0 |
0 |
23 |
|
Number of repeats |
monomeric |
|
9 |
2384 |
11 |
1 |
19 |
|
Comment |
|
|
10 |
2384 |
474 |
216 |
486 |
|
Representative
matrix |
no |
|
11 |
816 |
745 |
182 |
641 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|