HOXA2_1

 

 

 

 

A

C

G

T

 

Name

HOXA2

1

2196

2619

2370

1801

 

TF group

homeodomain

2

1574

3394

2663

1355

 

Polypeptide used

DBD

3

906

2764

513

6221

 

Ligand sequence

TTATTA20NTA

4

5858

3128

651

204

 

Batch of SELEX experiment

AF

5

8985

344

491

41

 

Seed sequence

NNYMATTANN

6

0

0

6

8985

 

Hamming distance of sequences to seed

1

7

161

1247

0

8985

 

SELEX cycle

3

8

8985

135

31

336

 

Number of repeats

monomeric

9

2188

2849

2840

1108

 

Comment

 

10

1640

3786

2040

1520

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Hoxa2_2

 

 

 

 

A

C

G

T

 

Name

Hoxa2

1

7453

5438

6024

4630

 

TF group

homeodomain

2

4303

8871

6774

3596

 

Polypeptide used

DBD

3

1652

5725

890

17820

 

Ligand sequence

TACCGT20NCG

4

16132

7413

1947

721

 

Batch of SELEX experiment

Z

5

23545

422

878

143

 

Seed sequence

NNYMATTANN

6

64

380

134

23545

 

Hamming distance of sequences to seed

1

7

807

2134

33

23545

 

SELEX cycle

3

8

23545

16

0

458

 

Number of repeats

monomeric

9

6230

6604

6894

3818

 

Comment

 

10

5204

8830

4112

5398

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764