HOXA13_1

 

 

 

 

A

C

G

T

 

Name

HOXA13

1

108

516

175

90

 

TF group

homeodomain

2

46

516

11

154

 

Polypeptide used

DBD

3

516

259

13

146

 

Ligand sequence

TTCTCT20NTA

4

516

0

2

25

 

Batch of SELEX experiment

AF

5

0

19

0

516

 

Seed sequence

CCAATAAAAN

6

516

18

4

90

 

Hamming distance of sequences to seed

1

7

516

5

9

30

 

SELEX cycle

3

8

516

28

0

16

 

Number of repeats

monomeric

9

516

175

67

119

 

Comment

 

10

163

190

43

121

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXA13_2

 

 

 

 

A

C

G

T

 

Name

HOXA13

1

114

286

311

166

 

TF group

homeodomain

2

31

878

79

12

 

Polypeptide used

DBD

3

6

39

26

878

 

Ligand sequence

TTCTCT20NTA

4

25

878

4

112

 

Batch of SELEX experiment

AF

5

223

11

878

0

 

Seed sequence

NCTCGTAAAAN

6

0

4

0

878

 

Hamming distance of sequences to seed

1

7

878

9

3

189

 

SELEX cycle

3

8

878

0

0

32

 

Number of repeats

monomeric

9

878

12

15

11

 

Comment

 

10

878

230

92

249

 

Representative matrix

no

11

280

287

116

195

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXA13_3

 

 

 

 

A

C

G

T

 

Name

HOXA13

1

62

247

71

4

 

TF group

homeodomain

2

1

247

8

125

 

Polypeptide used

full

3

247

70

9

43

 

Ligand sequence

TGTGGA20NGGG

4

247

0

0

31

 

Batch of SELEX experiment

AE

5

0

0

0

247

 

Seed sequence

CCAATAAAAN

6

247

9

5

15

 

Hamming distance of sequences to seed

1

7

247

0

0

16

 

SELEX cycle

4

8

247

3

0

0

 

Number of repeats

monomeric

9

247

60

44

34

 

Comment

 

10

104

72

23

48

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HOXA13_4

 

 

 

 

A

C

G

T

 

Name

HOXA13

1

83

42

55

120

 

TF group

homeodomain

2

18

300

17

0

 

Polypeptide used

full

3

0

19

0

300

 

Ligand sequence

TGTGGA20NGGG

4

0

300

0

59

 

Batch of SELEX experiment

AE

5

48

6

300

5

 

Seed sequence

NCTCGTAAAAN

6

13

3

0

300

 

Hamming distance of sequences to seed

1

7

300

1

0

21

 

SELEX cycle

4

8

300

0

0

0

 

Number of repeats

monomeric

9

300

0

0

0

 

Comment

 

10

300

10

31

58

 

Representative matrix

no

11

124

78

32

66

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764