|
|
HOXA10_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXA10 |
|
1 |
1328 |
795 |
1498 |
866 |
|
TF group |
homeodomain |
|
2 |
2284 |
1130 |
4488 |
43 |
|
Polypeptide used |
DBD |
|
3 |
176 |
342 |
36 |
4488 |
|
Ligand sequence |
TAGGAT30NAGT |
|
4 |
416 |
4488 |
4 |
162 |
|
Batch of SELEX experiment |
AI |
|
5 |
3083 |
7 |
4488 |
42 |
|
Seed sequence |
NGTCGTWAAANN |
|
6 |
39 |
0 |
0 |
4488 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3214 |
23 |
20 |
1273 |
|
SELEX cycle |
4 |
|
8 |
4488 |
0 |
0 |
96 |
|
Number of repeats |
monomeric |
|
9 |
4488 |
120 |
25 |
244 |
|
Comment |
|
|
10 |
4488 |
1212 |
756 |
1659 |
|
Representative matrix |
no |
|
11 |
1380 |
1043 |
720 |
1346 |
|
Source: |
|
|
12 |
1207 |
916 |
953 |
1412 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
HOXA10_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HOXA10 |
|
1 |
2315 |
1423 |
2993 |
1651 |
|
TF group |
homeodomain |
|
2 |
2425 |
1757 |
8381 |
1341 |
|
Polypeptide used |
DBD |
|
3 |
153 |
3867 |
59 |
4515 |
|
Ligand sequence |
TAGGAT30NAGT |
|
4 |
8381 |
4516 |
1022 |
957 |
|
Batch of SELEX experiment |
AI |
|
5 |
8381 |
455 |
718 |
267 |
|
Seed sequence |
NGYAATWAAAN |
|
6 |
367 |
11 |
0 |
8381 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
5960 |
84 |
121 |
2422 |
|
SELEX cycle |
4 |
|
8 |
8381 |
36 |
76 |
384 |
|
Number of repeats |
monomeric |
|
9 |
8381 |
568 |
125 |
331 |
|
Comment |
|
|
10 |
8381 |
2082 |
1560 |
2058 |
|
Representative
matrix |
no |
|
11 |
3017 |
2089 |
1230 |
2045 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|