HNF1B_1

 

 

 

 

A

C

G

T

 

Name

HNF1B

1

1528

1030

30839

1628

 

TF group

homeodomain

2

541

2552

1434

30839

 

Polypeptide used

full

3

5730

3466

778

30839

 

Ligand sequence

TCGACT20NCAT

4

30839

13

398

49

 

Batch of SELEX experiment

W

5

30839

1163

140

612

 

Seed sequence

GTTAATNATTAAY

6

1944

809

66

30839

 

Hamming distance of sequences to seed

1

7

6502

9236

9626

5474

 

SELEX cycle

2

8

30839

73

600

1047

 

Number of repeats

dimeric

9

1323

416

1589

30839

 

Comment

 

10

80

665

1

30839

 

Representative matrix

no

11

30839

794

5271

3119

 

 

 

12

30839

1472

1980

406

 

Source:

 

13

1790

17114

725

13724

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

15

 

 

 

 

 

 

 

16

 

 

 

 

 

 

 

17

 

 

 

 

 

 

 

18

 

 

 

 

 

 

 

19

 

 

 

 

 

 

 

20

 

 

 

 

 

 

 

21

 

 

 

 

 

 

 

22

 

 

 

 

 

 

 

23

 

 

 

 

 

 

 

 

HNF1B_2

 

 

 

 

A

C

G

T

 

Name

HNF1B

1

8805

4400

5808

4797

 

TF group

homeodomain

2

10423

667

13387

912

 

Polypeptide used

full

3

544

2027

1262

23811

 

Ligand sequence

TCGACT20NCAT

4

4263

4321

771

23811

 

Batch of SELEX experiment

W

5

23811

12

352

42

 

Seed sequence

NRTTAATNATTAACN

6

23811

1052

255

505

 

Hamming distance of sequences to seed

1

7

1699

767

78

23811

 

SELEX cycle

2

8

5518

7147

7277

3869

 

Number of repeats

dimeric

9

23811

43

428

728

 

Comment

 

10

1079

248

1198

23811

 

Representative matrix

no

11

57

473

4

23811

 

 

 

12

23811

418

1994

2299

 

 

 

13

23811

1026

1371

183

 

Source:

 

14

1756

23811

762

1187

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

6236

6753

3737

7084