HESX1_m1

 

 

 

 

A

C

G

T

 

Name

HESX1

1

831

753

1743

744

 

TF group

homeodomain

2

879

1432

447

1313

 

Polypeptide used

DBD

3

187

0

34

4072

 

Ligand sequence

TCTTCT20NCTG

4

4072

0

53

31

 

Batch of SELEX experiment

Z

5

4072

7

9

0

 

Seed sequence

NNTAATTRNN

6

0

0

15

4072

 

Hamming distance of sequences to seed

1

7

0

15

0

4072

 

SELEX cycle

3

8

1892

38

2180

97

 

Number of repeats

monomeric

9

1245

772

1681

373

 

Comment

 

10

801

1601

461

1209

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

HESX1_d1

 

 

 

 

A

C

G

T

 

Name

HESX1

1

255

472

183

460

 

TF group

homeodomain

2

21

28

11

1242

 

Polypeptide used

DBD

3

1185

1

18

37

 

Ligand sequence

TCTTCT20NCTG

4

1176

1

6

3

 

Batch of SELEX experiment

Z

5

11

4

14

1247

 

Seed sequence

NTAATTRGYAATTAN

6

22

17

22

1225

 

Hamming distance of sequences to seed

2

7

420

2

1014

8

 

SELEX cycle

3

8

182

0

1301

129

 

Number of repeats

dimeric

9

15

872

15

552

 

Comment

 

10

1167

46

33

53

 

Representative matrix

no

11

1200

40

31

21

 

 

 

12

20

27

7

1222

 

 

 

13

87

41

7

1218

 

Source:

 

14

1186

2

24

32

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

471

99

416

311