|
GRHL1_dd1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GRHL1 |
1 |
2101 |
142 |
950 |
464 |
|
TF group |
CP2 |
2 |
2238 |
99 |
160 |
239 |
|
Polypeptide used |
DBD |
3 |
0 |
1828 |
122 |
5 |
|
Ligand sequence |
TCCAAC20NTA |
4 |
157 |
1824 |
237 |
599 |
|
Batch of SELEX experiment |
Q |
5 |
555 |
402 |
2797 |
927 |
|
Seed sequence |
AACCGGWNNNWCCGGTT |
6 |
26 |
24 |
3717 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
763 |
274 |
103 |
2296 |
|
SELEX cycle |
3 |
8 |
520 |
675 |
137 |
1226 |
|
Number of repeats |
dimer of dimers |
9 |
565 |
451 |
406 |
1376 |
|
Comment |
|
10 |
1455 |
164 |
390 |
637 |
|
Representative matrix |
yes |
11 |
1776 |
67 |
199 |
750 |
|
|
|
12 |
2 |
1774 |
0 |
1 |
|
|
|
13 |
492 |
1728 |
263 |
344 |
|
|
|
14 |
678 |
137 |
3549 |
368 |
|
|
|
15 |
0 |
91 |
3812 |
4 |
|
Source: |
|
16 |
389 |
130 |
53 |
3316 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
201 |
581 |
171 |
2896 |
|
|
|
|
|
|
|
|
|
|
|
|
GRHL1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GRHL1 |
1 |
8451 |
1887 |
2358 |
2416 |
|
TF group |
CP2 |
2 |
15112 |
288 |
1444 |
960 |
|
Polypeptide used |
DBD |
3 |
15112 |
77 |
215 |
662 |
|
Ligand sequence |
TCCAAC20NTA |
4 |
8 |
15112 |
0 |
6 |
|
Batch of SELEX experiment |
Q |
5 |
1223 |
15112 |
161 |
771 |
|
Seed sequence |
NAACCGGTTN |
6 |
1735 |
541 |
15112 |
1291 |
|
Hamming distance of sequences to seed |
1 |
7 |
3 |
0 |
15112 |
5 |
|
SELEX cycle |
3 |
8 |
1498 |
336 |
60 |
15112 |
|
Number of repeats |
dimeric |
9 |
827 |
2961 |
124 |
15112 |
|
Comment |
|
10 |
2249 |
4766 |
1135 |
6962 |
|
Representative matrix |
yes |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
GRHL1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
GRHL1 |
1 |
1345 |
472 |
247 |
427 |
|
TF group |
CP2 |
2 |
2491 |
109 |
409 |
418 |
|
Polypeptide used |
full |
3 |
2491 |
3 |
112 |
62 |
|
Ligand sequence |
TGGACA20NCAT |
4 |
2491 |
1 |
7 |
28 |
|
Batch of SELEX experiment |
W |
5 |
0 |
2491 |
0 |
0 |
|
Seed sequence |
NAAACCGGTTTN |
6 |
371 |
2491 |
51 |
221 |
|
Hamming distance of sequences to seed |
1 |
7 |
332 |
52 |
2491 |
200 |
|
SELEX cycle |
3 |
8 |
0 |
1 |
2491 |
0 |
|
Number of repeats |
dimeric |
9 |
76 |
4 |
2 |
2491 |
|
Comment |
|
10 |
127 |
186 |
12 |
2491 |
|
Representative
matrix |
no |
11 |
761 |
537 |
244 |
2491 |
|
Source: |
|
12 |
685 |
289 |
655 |
862 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |