GMEB2_d1

 

 

 

 

A

C

G

T

 

Name

GMEB2

1

1790

2710

1021

7714

 

TF group

SAND

2

1289

2894

3133

7714

 

Polypeptide used

DBD

3

7714

91

249

77

 

Ligand sequence

TGGATG20NGA

4

8

7714

0

22

 

Batch of SELEX experiment

O

5

33

19

7714

18

 

Seed sequence

TTACGYAM

6

76

3252

72

4461

 

Hamming distance of sequences to seed

1

7

7714

794

1136

1242

 

SELEX cycle

3

8

3463

4250

854

914

 

Number of repeats

dimeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

GMEB2_dd1

 

 

 

 

A

C

G

T

 

Name

GMEB2

1

551

7

85

490

 

TF group

SAND

2

716

0

325

1

 

Polypeptide used

DBD

3

3

1042

1

0

 

Ligand sequence

TGGATG20NGA

4

1

0

1042

1

 

Batch of SELEX experiment

O

5

0

33

0

1042

 

Seed sequence

WRCGTAACCACGYN

6

1042

26

356

1

 

Hamming distance of sequences to seed

1

7

1042

53

5

22

 

SELEX cycle

4

8

166

1042

351

49

 

Number of repeats

dimer of dimers

9

15

1042

11

139

 

Comment

 

10

1042

4

31

2

 

Representative matrix

yes

11

0

1042

0

0

 

 

 

12

0

57

1042

1

 

Source:

 

13

1

176

1

866

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

698

0

4

339

 

 

 

 

 

 

 

 

 

 

 

 

GMEB2_dd2

 

 

 

 

A

C

G

T

 

Name

GMEB2

1

415

1372

511

2903

 

TF group

SAND

2

4457

73

456

60

 

Polypeptide used

DBD

3

8

4661

9

6

 

Ligand sequence

TGGATG20NGA

4

3

28

4663

100

 

Batch of SELEX experiment

O

5

553

530

24

4190

 

Seed sequence

YACGTAACNKACGTA

6

4337

293

412

383

 

Hamming distance of sequences to seed

3

7

4100

870

504

117

 

SELEX cycle

4

8

697

3781

587

580

 

Number of repeats

dimer of dimers

9

301

954

1028

2388

 

Comment

 

10

122

1368

2123

1512

 

Representative matrix

yes

11

4375

56

552

121

 

 

 

12

41

4637

192

13

 

 

 

13

16

52

4670

102

 

Source:

 

14

163

1540

123

3504

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

4570

353

359

166

 

 

 

 

 

 

 

 

 

 

 

 

GMEB2_d2

 

 

 

 

A

C

G

T

 

Name

GMEB2

1

34

75

109

239

 

TF group

SAND

2

25

10

86

239

 

Polypeptide used

DBD

3

239

0

5

0

 

Ligand sequence

TCGCGC20NGA

4

4

239

0

0

 

Batch of SELEX experiment

Y

5

0

4

239

0

 

Seed sequence

TTACGTAA

6

0

21

0

239

 

Hamming distance of sequences to seed

1

7

239

66

12

9

 

SELEX cycle

4

8

239

84

24

5

 

Number of repeats

dimeric

 

 

 

 

 

 

Comment

replicate experiment (mammalian expression)

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764