GCM1_m1

 

 

 

 

A

C

G

T

 

Name

GCM1

1

322

879

623

766

 

TF group

GCM

2

2590

99

413

57

 

Polypeptide used

DBD

3

6

3

11

2590

 

Ligand sequence

TGAGCA20NCGA

4

442

26

2590

2

 

Batch of SELEX experiment

Y

5

107

2590

127

100

 

Seed sequence

NATGCGGGTA

6

94

4

2590

478

 

Hamming distance of sequences to seed

1

7

0

0

2590

1

 

SELEX cycle

4

8

2

1

2590

0

 

Number of repeats

monomeric

9

30

491

15

2590

 

Comment

 

10

2590

492

915

568

 

Representative matrix

yes

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

GCM1_d1

 

 

 

 

A

C

G

T

 

Name

GCM1

1

1748

319

693

99

 

TF group

GCM

2

97

401

112

3033

 

Polypeptide used

full

3

1386

97

1572

20

 

Ligand sequence

TCCAGT20NGAC

4

479

2161

150

639

 

Batch of SELEX experiment

AE

5

328

40

2172

1512

 

Seed sequence

ATGCGGGYRCCCGCAT

6

8

6

2684

42

 

Hamming distance of sequences to seed

2

7

2

19

2676

4

 

SELEX cycle

4

8

1

703

54

2013

 

Number of repeats

dimeric

9

1364

12

955

8

 

Comment

 

10

29

2162

34

4

 

Representative matrix

yes

11

10

2133

20

13

 

 

 

12

1417

2000

39

477

 

 

 

13

164

154

2699

701

 

 

 

14

37

2202

93

864

 

Source:

 

15

2072

311

49

243

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

1036

1222

1051

2423

 

 

 

 

 

 

 

 

 

 

 

 

GCM1_m2

 

 

 

 

A

C

G

T

 

Name

GCM1

1

2522

8553

5154

5210

 

TF group

GCM

2

21439

1811

4010

261

 

Polypeptide used

full

3

161

154

96

21439

 

Ligand sequence

TCCAGT20NGAC

4

4371

274

21439

15

 

Batch of SELEX experiment

AE

5

1002

21439

572

880

 

Seed sequence

NATGCGGGTAN

6

594

255

21439

3815

 

Hamming distance of sequences to seed

1

7

0

4

21439

35

 

SELEX cycle

4

8

0

18

21439

10

 

Number of repeats

monomeric

9

146

4992

147

21439

 

Comment

 

10

21439

2905

7971

2014

 

Representative matrix

no

11

789

13412

4829

2409

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764