|
|
GBX1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
GBX1 |
|
1 |
10001 |
6727 |
7838 |
2774 |
|
TF group |
homeodomain |
|
2 |
1674 |
14978 |
6964 |
3723 |
|
Polypeptide used |
DBD |
|
3 |
243 |
13543 |
15 |
13796 |
|
Ligand sequence |
TAGTCC20NCG |
|
4 |
27339 |
589 |
758 |
157 |
|
Batch of SELEX experiment |
Y |
|
5 |
27339 |
172 |
29 |
23 |
|
Seed sequence |
NNYAATTANN |
|
6 |
45 |
128 |
1 |
27339 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
312 |
438 |
246 |
27339 |
|
SELEX cycle |
4 |
|
8 |
27339 |
50 |
8 |
321 |
|
Number of repeats |
monomeric |
|
9 |
5720 |
6377 |
12203 |
3039 |
|
Comment |
|
|
10 |
3526 |
11717 |
5441 |
6655 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Gbx1_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Gbx1 |
|
1 |
13049 |
9882 |
11341 |
7555 |
|
TF group |
homeodomain |
|
2 |
5646 |
18411 |
7528 |
10241 |
|
Polypeptide used |
DBD |
|
3 |
2074 |
22908 |
481 |
18918 |
|
Ligand sequence |
TCGGTT20NCG |
|
4 |
41827 |
2814 |
1677 |
1776 |
|
Batch of SELEX experiment |
Q |
|
5 |
41827 |
649 |
0 |
54 |
|
Seed sequence |
NNYAATTANN |
|
6 |
0 |
0 |
67 |
41827 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1334 |
2002 |
1672 |
41827 |
|
SELEX cycle |
2 |
|
8 |
41827 |
544 |
258 |
1918 |
|
Number of repeats |
monomeric |
|
9 |
13728 |
8864 |
13589 |
5645 |
|
Comment |
|
|
10 |
9137 |
14392 |
10898 |
7399 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|