FOXK1_1

 

 

 

 

A

C

G

T

 

Name

FOXK1

1

49

3958

97

53

 

TF group

forkhead

2

47

34

5536

0

 

Polypeptide used

DBD

3

6

67

5202

178

 

Ligand sequence

GACAG14N

4

3046

0

3

0

 

Batch of SELEX experiment

S

5

0

4193

0

0

 

Seed sequence

CGGACACAAT

6

3126

0

2

0

 

Hamming distance of sequences to seed

2

7

0

3344

23

33

 

SELEX cycle

4

8

3248

15

23

40

 

Number of repeats

putatively multimeric

9

3306

0

6

35

 

Comment

 

10

133

11

219

3772

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Foxk1_2

 

 

 

 

A

C

G

T

 

Name

Foxk1

1

650

13424

1040

388

 

TF group

forkhead

2

356

9

34422

15

 

Polypeptide used

DBD

3

0

153

34309

331

 

Ligand sequence

TGGGTA20NCG

4

17750

0

27

10

 

Batch of SELEX experiment

Q

5

0

13929

14

18

 

Seed sequence

CGGACACAATC

6

17580

15

22

0

 

Hamming distance of sequences to seed

2

7

5

13951

1

24

 

SELEX cycle

4

8

17469

0

95

40

 

Number of repeats

putatively multimeric

9

17358

0

22

37

 

Comment

 

10

2278

0

177

23973

 

Representative matrix

no

11

493

12819

1820

1163

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Foxk1_m1

 

 

 

 

A

C

G

T

 

Name

Foxk1

1

1330

0

2256

68

 

TF group

forkhead

2

413

608

401

3586

 

Polypeptide used

DBD

3

3586

738

114

118

 

Ligand sequence

TGGGTA20NCG

4

3586

168

177

272

 

Batch of SELEX experiment

Q

5

3586

465

107

227

 

Seed sequence

RTAAACA

6

551

3586

280

831

 

Hamming distance of sequences to seed

1

7

3586

0

84

157

 

SELEX cycle

4

 

 

 

 

 

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764