|
FOXK1_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXK1 |
1 |
49 |
3958 |
97 |
53 |
|
TF group |
forkhead |
2 |
47 |
34 |
5536 |
0 |
|
Polypeptide used |
DBD |
3 |
6 |
67 |
5202 |
178 |
|
Ligand sequence |
GACAG14N |
4 |
3046 |
0 |
3 |
0 |
|
Batch of SELEX experiment |
S |
5 |
0 |
4193 |
0 |
0 |
|
Seed sequence |
CGGACACAAT |
6 |
3126 |
0 |
2 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
3344 |
23 |
33 |
|
SELEX cycle |
4 |
8 |
3248 |
15 |
23 |
40 |
|
Number of repeats |
putatively multimeric |
9 |
3306 |
0 |
6 |
35 |
|
Comment |
|
10 |
133 |
11 |
219 |
3772 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxk1_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxk1 |
1 |
650 |
13424 |
1040 |
388 |
|
TF group |
forkhead |
2 |
356 |
9 |
34422 |
15 |
|
Polypeptide used |
DBD |
3 |
0 |
153 |
34309 |
331 |
|
Ligand sequence |
TGGGTA20NCG |
4 |
17750 |
0 |
27 |
10 |
|
Batch of SELEX experiment |
Q |
5 |
0 |
13929 |
14 |
18 |
|
Seed sequence |
CGGACACAATC |
6 |
17580 |
15 |
22 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
5 |
13951 |
1 |
24 |
|
SELEX cycle |
4 |
8 |
17469 |
0 |
95 |
40 |
|
Number of repeats |
putatively multimeric |
9 |
17358 |
0 |
22 |
37 |
|
Comment |
|
10 |
2278 |
0 |
177 |
23973 |
|
Representative matrix |
no |
11 |
493 |
12819 |
1820 |
1163 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Foxk1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Foxk1 |
1 |
1330 |
0 |
2256 |
68 |
|
TF group |
forkhead |
2 |
413 |
608 |
401 |
3586 |
|
Polypeptide used |
DBD |
3 |
3586 |
738 |
114 |
118 |
|
Ligand sequence |
TGGGTA20NCG |
4 |
3586 |
168 |
177 |
272 |
|
Batch of SELEX experiment |
Q |
5 |
3586 |
465 |
107 |
227 |
|
Seed sequence |
RTAAACA |
6 |
551 |
3586 |
280 |
831 |
|
Hamming distance of sequences to seed |
1 |
7 |
3586 |
0 |
84 |
157 |
|
SELEX cycle |
4 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |