FOXJ2_d1

 

 

 

 

A

C

G

T

 

Name

FOXJ2

1

1450

154

5450

16

 

TF group

forkhead

2

447

200

61

6373

 

Polypeptide used

DBD

3

4130

557

3

117

 

Ligand sequence

TGACGA20NGA

4

4328

52

6

67

 

Batch of SELEX experiment

W

5

4383

16

8

18

 

Seed sequence

RTAAACAATAAAYA

6

28

4041

4

519

 

Hamming distance of sequences to seed

2

7

4410

4

8

14

 

SELEX cycle

3

8

3690

31

1926

25

 

Number of repeats

dimeric

9

1228

164

40

6354

 

Comment

 

10

3649

1806

87

250

 

Representative matrix

yes

11

4377

149

56

43

 

 

 

12

4435

356

73

107

 

Source:

 

13

411

3979

20

299

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

4512

25

68

46

 

 

 

 

 

 

 

 

 

 

 

 

FOXJ2_m1

 

 

 

 

A

C

G

T

 

Name

FOXJ2

1

615

52

825

16

 

TF group

forkhead

2

113

251

21

1440

 

Polypeptide used

DBD

3

1440

256

19

8

 

Ligand sequence

TGACGA20NGA

4

1440

90

0

17

 

Batch of SELEX experiment

W

5

1440

0

2

28

 

Seed sequence

RTAAACAA

6

20

1440

2

124

 

Hamming distance of sequences to seed

1

7

1440

0

13

0

 

SELEX cycle

2

8

1440

424

200

430

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

FOXJ2_d2

 

 

 

 

A

C

G

T

 

Name

FOXJ2

1

3291

277

12429

60

 

TF group

forkhead

2

725

897

125

14145

 

Polypeptide used

DBD

3

9548

530

46

681

 

Ligand sequence

TGACGA20NGA

4

9788

217

131

578

 

Batch of SELEX experiment

W

5

9848

88

57

105

 

Seed sequence

RTAAACAWMAACA

6

145

8538

56

1656

 

Hamming distance of sequences to seed

2

7

9888

26

327

9

 

SELEX cycle

3

8

4312

238

135

7924

 

Number of repeats

dimeric

9

6039

2998

98

1395

 

Comment

 

10

9568

789

219

1336

 

Representative matrix

yes

11

9926

328

363

130

 

 

 

12

1388

8951

181

1143

 

Source:

 

13

10064

241

356

246

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764