|
|
FOXI1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXI1 |
|
1 |
618 |
39 |
5175 |
0 |
|
TF group |
forkhead |
|
2 |
74 |
60 |
35 |
5175 |
|
Polypeptide used |
full |
|
3 |
5175 |
540 |
37 |
0 |
|
Ligand sequence |
TCGGAA20NGA |
|
4 |
5175 |
23 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
|
5 |
5175 |
23 |
29 |
66 |
|
Seed sequence |
GTAAACA |
|
6 |
157 |
5175 |
48 |
810 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
5175 |
12 |
25 |
0 |
|
SELEX cycle |
4 |
|
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXI1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXI1 |
|
1 |
1781 |
113 |
1043 |
161 |
|
TF group |
forkhead |
|
2 |
45 |
4 |
0 |
3310 |
|
Polypeptide used |
full |
|
3 |
378 |
8 |
5248 |
0 |
|
Ligand sequence |
TCGGAA20NGA |
|
4 |
0 |
25 |
0 |
3508 |
|
Batch of SELEX experiment |
AF |
|
5 |
59 |
0 |
1201 |
2671 |
|
Seed sequence |
NTGTTTACRGTAAAYAN |
|
6 |
7 |
0 |
859 |
3412 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
2838 |
11 |
0 |
11 |
|
SELEX cycle |
4 |
|
8 |
6 |
2414 |
7 |
49 |
|
Number of repeats |
dimeric |
|
9 |
915 |
2 |
3453 |
0 |
|
Comment |
|
|
10 |
68 |
80 |
4809 |
98 |
|
Representative matrix |
yes |
|
11 |
549 |
13 |
11 |
3519 |
|
|
|
|
12 |
2911 |
471 |
0 |
0 |
|
|
|
|
13 |
2912 |
31 |
0 |
8 |
|
|
|
|
14 |
2833 |
0 |
37 |
81 |
|
|
|
|
15 |
19 |
2439 |
3 |
34 |
|
Source: |
|
|
16 |
2767 |
115 |
5 |
40 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
2422 |
166 |
99 |
265 |
|
|
|