FOXG1_d1

 

 

 

 

A

C

G

T

 

Name

FOXG1

1

233

0

169

2

 

TF group

forkhead

2

3

9

0

308

 

Polypeptide used

DBD

3

248

5

0

0

 

Ligand sequence

TGGTTC20NGA

4

248

0

0

0

 

Batch of SELEX experiment

AA

5

248

0

0

2

 

Seed sequence

ATAAACAANWGTAAACA

6

0

186

0

4

 

Hamming distance of sequences to seed

2

7

248

0

0

0

 

SELEX cycle

4

8

249

0

2

0

 

Number of repeats

dimeric

9

14

33

23

224

 

Comment

 

10

129

2

112

151

 

Representative matrix

yes

11

19

0

447

0

 

 

 

12

2

0

0

311

 

 

 

13

253

0

0

0

 

 

 

14

253

0

0

0

 

 

 

15

253

0

0

0

 

Source:

 

16

0

196

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

262

1

0

1

 

 

 

 

 

 

 

 

 

 

 

 

FOXG1_1

 

 

 

 

A

C

G

T

 

Name

FOXG1

1

428

65

351

42

 

TF group

forkhead

2

22

433

4

107

 

Polypeptide used

DBD

3

17

0

1347

14

 

Ligand sequence

TGGTTC20NGA

4

10

0

1342

0

 

Batch of SELEX experiment

AA

5

683

8

10

0

 

Seed sequence

RCGGACACAATR

6

0

463

0

11

 

Hamming distance of sequences to seed

2

7

691

4

3

0

 

SELEX cycle

4

8

2

460

7

5

 

Number of repeats

putatively multimeric

9

702

13

14

3

 

Comment

 

10

687

0

7

11

 

Representative matrix

no

11

10

0

37

872

 

Source:

 

12

359

11

608

103

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Foxg1_d2

 

 

 

 

A

C

G

T

 

Name

Foxg1

1

2936

26

529

7

 

TF group

forkhead

2

0

91

7

4689

 

Polypeptide used

DBD

3

2975

0

0

0

 

Ligand sequence

TATCTG20NTCG

4

2966

0

7

0

 

Batch of SELEX experiment

AF

5

2851

0

0

7

 

Seed sequence

ATAAACAAGTRTAAACA

6

4

4104

0

59

 

Hamming distance of sequences to seed

2

7

2968

0

0

0

 

SELEX cycle

4

8

2992

0

0

924

 

Number of repeats

dimeric

9

2114

1276

3783

92

 

Comment

 

10

182

161

132

4627

 

Representative matrix

yes

11

639

0

3925

0

 

 

 

12

0

6

0

4633

 

 

 

13

3065

1673

0

0

 

 

 

14

3124

0

0

0

 

 

 

15

3131

6

0

0

 

Source:

 

16

0

4194

0

73

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

3063

6

6

0

 

 

 

 

 

 

 

 

 

 

 

 

Foxg1_2

 

 

 

 

A

C

G

T

 

Name

Foxg1

1

54

119

20

5

 

TF group

forkhead

2

51

124

8

45

 

Polypeptide used

DBD

3

0

0

275

2

 

Ligand sequence

TATCTG20NTCG

4

0

1

280

3

 

Batch of SELEX experiment

AF

5

147

0

0

13

 

Seed sequence

NMGGACACAATC

6

9

220

2

7

 

Hamming distance of sequences to seed

2

7

154

7

2

0

 

SELEX cycle

4

8

0

219

0

3

 

Number of repeats

putatively multimeric

9

154

12

9

7

 

Comment

 

10

138

23

14

5

 

Representative matrix

yes

11

12

6

17

241

 

Source:

 

12

6

176

15

48

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Foxg1_m1

 

 

 

 

A

C

G

T

 

Name

Foxg1

1

1590

0

5613

16

 

TF group

forkhead

2

445

357

137

7203

 

Polypeptide used

DBD

3

7203

816

0

0

 

Ligand sequence

TATCTG20NTCG

4

7203

57

5

0

 

Batch of SELEX experiment

AF

5

7203

0

0

0

 

Seed sequence

RTAAAYA

6

60

5987

30

1216

 

Hamming distance of sequences to seed

1

7

7203

0

32

0

 

SELEX cycle

4

 

 

 

 

 

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764