|
|
FOXD3_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXD3 |
|
1 |
4276 |
1863 |
2301 |
3647 |
|
TF group |
forkhead |
|
2 |
5016 |
1975 |
6477 |
282 |
|
Polypeptide used |
DBD |
|
3 |
4647 |
3071 |
237 |
4828 |
|
Ligand sequence |
TGGGGT20NGGT |
|
4 |
4315 |
348 |
113 |
6285 |
|
Batch of SELEX experiment |
Z |
|
5 |
10402 |
113 |
251 |
303 |
|
Seed sequence |
NRNWAAYRTTKNYN |
|
6 |
10566 |
242 |
156 |
508 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
0 |
4338 |
124 |
8807 |
|
SELEX cycle |
3 |
|
8 |
8236 |
147 |
3381 |
24 |
|
Number of repeats |
dimeric |
|
9 |
250 |
81 |
340 |
12298 |
|
Comment |
|
|
10 |
213 |
193 |
269 |
12276 |
|
Representative matrix |
no |
|
11 |
712 |
178 |
5114 |
7958 |
|
|
|
|
12 |
7971 |
275 |
1895 |
1357 |
|
Source: |
|
|
13 |
427 |
8748 |
1220 |
4169 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
4269 |
1586 |
1790 |
4357 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
FOXD3_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXD3 |
|
1 |
1607 |
168 |
4737 |
87 |
|
TF group |
forkhead |
|
2 |
745 |
940 |
131 |
6344 |
|
Polypeptide used |
DBD |
|
3 |
6344 |
1568 |
9 |
70 |
|
Ligand sequence |
TGGGGT20NGGT |
|
4 |
6344 |
70 |
0 |
6 |
|
Batch of SELEX experiment |
Z |
|
5 |
6344 |
0 |
21 |
18 |
|
Seed sequence |
RTAAAYA |
|
6 |
57 |
3630 |
44 |
2714 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
6344 |
0 |
1120 |
197 |
|
SELEX cycle |
3 |
|
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|