|
FOXD2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXD2 |
1 |
631 |
316 |
255 |
388 |
|
TF group |
forkhead |
2 |
921 |
205 |
668 |
27 |
|
Polypeptide used |
DBD |
3 |
606 |
364 |
49 |
571 |
|
Ligand sequence |
TGCTCG20NCTC |
4 |
839 |
52 |
14 |
750 |
|
Batch of SELEX experiment |
Z |
5 |
1589 |
29 |
17 |
93 |
|
Seed sequence |
NRNWAAYRTTKNYN |
6 |
1589 |
25 |
13 |
171 |
|
Hamming distance of sequences to seed |
1 |
7 |
14 |
493 |
0 |
1096 |
|
SELEX cycle |
2 |
8 |
1173 |
0 |
417 |
0 |
|
Number of repeats |
dimeric |
9 |
65 |
0 |
16 |
1589 |
|
Comment |
|
10 |
64 |
15 |
69 |
1589 |
|
Representative matrix |
no |
11 |
192 |
0 |
530 |
1060 |
|
|
|
12 |
1087 |
64 |
225 |
213 |
|
Source: |
|
13 |
34 |
899 |
134 |
691 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
505 |
286 |
239 |
560 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXD2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
FOXD2 |
1 |
605 |
53 |
1261 |
30 |
|
TF group |
forkhead |
2 |
261 |
384 |
0 |
1866 |
|
Polypeptide used |
DBD |
3 |
1866 |
281 |
0 |
120 |
|
Ligand sequence |
TGCTCG20NCTC |
4 |
1866 |
59 |
20 |
32 |
|
Batch of SELEX experiment |
Z |
5 |
1866 |
0 |
0 |
35 |
|
Seed sequence |
RTAAAYA |
6 |
0 |
1361 |
28 |
505 |
|
Hamming distance of sequences to seed |
1 |
7 |
1866 |
0 |
223 |
176 |
|
SELEX cycle |
2 |
|
|
|
|
|
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |