FOXC2_d1

 

 

 

 

A

C

G

T

 

Name

FOXC2

1

3469

1989

2267

4388

 

TF group

forkhead

2

3633

859

8334

243

 

Polypeptide used

DBD

3

3037

1910

662

11006

 

Ligand sequence

TGAGTG30NTGA

4

5680

5078

247

2302

 

Batch of SELEX experiment

AI

5

9003

197

161

266

 

Seed sequence

NRTMAATATTKAYN

6

8956

232

235

682

 

Hamming distance of sequences to seed

2

7

0

2984

73

13081

 

SELEX cycle

3

8

8700

45

1655

21

 

Number of repeats

dimeric

9

1230

208

477

13586

 

Comment

 

10

633

285

349

13787

 

Representative matrix

no

11

1264

242

7656

6255

 

 

 

12

8469

519

1169

2184

 

Source:

 

13

327

9606

837

4011

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

4776

1701

1916

3115

 

 

 

 

 

 

 

 

 

 

 

 

FOXC2_d2

 

 

 

 

A

C

G

T

 

Name

FOXC2

1

5819

1413

7070

1727

 

TF group

forkhead

2

2704

1991

207

12889

 

Polypeptide used

DBD

3

12889

1385

147

127

 

Ligand sequence

TGAGTG30NTGA

4

12889

471

258

272

 

Batch of SELEX experiment

AI

5

12889

47

892

78

 

Seed sequence

RTAAAYAAACA

6

83

4849

24

8040

 

Hamming distance of sequences to seed

1

7

12889

184

46

38

 

SELEX cycle

3

8

12889

218

120

324

 

Number of repeats

dimeric

9

12889

195

398

888

 

Comment

 

10

1180

12889

609

3364

 

Representative matrix

no

11

12889

590

740

777

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

FOXC2_m1

 

 

 

 

A

C

G

T

 

Name

FOXC2

1

8939

1279

454

11517

 

TF group

forkhead

2

20456

1652

5093

2080

 

Polypeptide used

DBD

3

11301

3476

3129

9155

 

Ligand sequence

TGAGTG30NTGA

4

6418

440

14038

136

 

Batch of SELEX experiment

AI

5

2005

3773

321

20456

 

Seed sequence

WAWRTAAAYAWW

6

20456

6759

87

122

 

Hamming distance of sequences to seed

1

7

20456

344

81

107

 

SELEX cycle

3

8

20456

105

279

242

 

Number of repeats

monomeric

9

31

14435

68

6021

 

Comment

 

10

20456

101

328

215

 

Representative matrix

no

11

13296

2087

1710

7160

 

 

 

12

10995

3080

2649

9461

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764