FOXC1_d1

 

 

 

 

A

C

G

T

 

Name

FOXC1

1

2886

190

622

231

 

TF group

forkhead

2

1657

317

248

663

 

Polypeptide used

DBD

3

1306

98

1580

205

 

Ligand sequence

TGAGGC30NGGA

4

752

324

35

2886

 

Batch of SELEX experiment

AI

5

2886

324

25

7

 

Seed sequence

ANRTAAAYAAACA

6

2886

53

32

57

 

Hamming distance of sequences to seed

1

7

2886

8

110

7

 

SELEX cycle

3

8

12

1057

8

1829

 

Number of repeats

dimeric

9

2886

38

9

0

 

Comment

 

10

2886

53

52

57

 

Representative matrix

no

11

2886

82

107

184

 

 

 

12

498

2886

204

969

 

Source:

 

13

2886

156

220

142

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

FOXC1_d2

 

 

 

 

A

C

G

T

 

Name

FOXC1

1

5830

2784

3525

6645

 

TF group

forkhead

2

5978

1208

12734

218

 

Polypeptide used

DBD

3

4832

2830

867

15996

 

Ligand sequence

TGAGGC30NGGA

4

9518

7470

54

3153

 

Batch of SELEX experiment

AI

5

14437

115

118

103

 

Seed sequence

NRTMAATATTKAYN

6

14440

99

142

132

 

Hamming distance of sequences to seed

2

7

0

1791

48

20151

 

SELEX cycle

3

8

14082

74

1275

11

 

Number of repeats

dimeric

9

326

110

154

20638

 

Comment

 

10

200

102

230

20680

 

Representative matrix

yes

11

1808

44

11094

10283

 

 

 

12

13352

480

1774

3719

 

Source:

 

13

294

14403

1460

6878

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

7841

2384

2791

4932

 

 

 

 

 

 

 

 

 

 

 

 

FOXC1_m1

 

 

 

 

A

C

G

T

 

Name

FOXC1

1

6452

772

304

12038

 

TF group

forkhead

2

14324

728

4165

1386

 

Polypeptide used

DBD

3

7893

2008

2422

10596

 

Ligand sequence

TGAGGC30NGGA

4

4858

336

13631

51

 

Batch of SELEX experiment

AI

5

2496

1652

390

18489

 

Seed sequence

WRWRTMAAYAW

6

13117

5372

21

45

 

Hamming distance of sequences to seed

1

7

18489

108

0

57

 

SELEX cycle

3

8

18489

56

141

112

 

Number of repeats

monomeric

9

122

8782

165

9708

 

Comment

 

10

18489

27

433

184

 

Representative matrix

no

11

6702

1558

1107

11787

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Foxc1_d3

 

 

 

 

A

C

G

T

 

Name

Foxc1

1

738

61

1592

51

 

TF group

forkhead

2

184

165

30

1496

 

Polypeptide used

DBD

3

1232

141

7

19

 

Ligand sequence

CCCCT14N

4

1268

30

6

13

 

Batch of SELEX experiment

T

5

1312

1

25

0

 

Seed sequence

GTAAAYAAACA

6

3

628

1

881

 

Hamming distance of sequences to seed

2

7

1301

2

1

3

 

SELEX cycle

4

8

1303

0

0

2

 

Number of repeats

dimeric

9

1319

25

26

19

 

Comment

 

10

42

1337

15

220

 

Representative matrix

yes

11

1328

30

40

7

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Foxc1_m2

 

 

 

 

A

C

G

T

 

Name

Foxc1

1

601

15

389

0

 

TF group

forkhead

2

46

150

0

990

 

Polypeptide used

DBD

3

990

195

26

5

 

Ligand sequence

CCCCT14N

4

990

21

41

38

 

Batch of SELEX experiment

T

5

990

6

0

18

 

Seed sequence

RTAAAYA

6

7

765

0

224

 

Hamming distance of sequences to seed

1

7

990

0

6

0

 

SELEX cycle

4

 

 

 

 

 

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764