|
|
ETS1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ETS1 |
|
1 |
2683 |
210 |
640 |
241 |
|
TF group |
ETS |
|
2 |
180 |
2683 |
297 |
22 |
|
Polypeptide used |
DBD |
|
3 |
425 |
2683 |
7 |
0 |
|
Ligand sequence |
TGTACC30NCAG |
|
4 |
0 |
21 |
2683 |
0 |
|
Batch of SELEX experiment |
AI |
|
5 |
0 |
0 |
2683 |
12 |
|
Seed sequence |
ACCGGAARYN |
|
6 |
2683 |
0 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2683 |
9 |
31 |
909 |
|
SELEX cycle |
2 |
|
8 |
1102 |
21 |
1580 |
12 |
|
Number of repeats |
monomeric |
|
9 |
89 |
712 |
124 |
1970 |
|
Comment |
|
|
10 |
803 |
401 |
1083 |
396 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
ETS1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ETS1 |
|
1 |
2027 |
290 |
568 |
182 |
|
TF group |
ETS |
|
2 |
526 |
3066 |
700 |
43 |
|
Polypeptide used |
DBD |
|
3 |
976 |
3066 |
47 |
2 |
|
Ligand sequence |
TGTACC30NCAG |
|
4 |
1 |
1 |
3066 |
1 |
|
Batch of SELEX experiment |
AI |
|
5 |
1 |
2 |
3066 |
0 |
|
Seed sequence |
NCCGGAWRYRYWTCCGGN |
|
6 |
3066 |
8 |
10 |
5 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1952 |
149 |
10 |
1115 |
|
SELEX cycle |
3 |
|
8 |
960 |
54 |
2107 |
13 |
|
Number of repeats |
dimeric |
|
9 |
32 |
1178 |
130 |
1889 |
|
Comment |
|
|
10 |
1820 |
113 |
1246 |
31 |
|
Representative matrix |
yes |
|
11 |
30 |
2287 |
92 |
780 |
|
|
|
|
12 |
1619 |
24 |
104 |
1447 |
|
|
|
|
13 |
106 |
18 |
33 |
3066 |
|
|
|
|
14 |
20 |
3066 |
14 |
8 |
|
|
|
|
15 |
10 |
3066 |
10 |
6 |
|
|
|
|
16 |
15 |
78 |
3066 |
826 |
|
Source: |
|
|
17 |
176 |
1286 |
3066 |
746 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
459 |
687 |
305 |
1615 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
ETS1_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ETS1 |
|
1 |
2392 |
333 |
526 |
400 |
|
TF group |
ETS |
|
2 |
223 |
2392 |
208 |
21 |
|
Polypeptide used |
full |
|
3 |
318 |
2392 |
43 |
0 |
|
Ligand sequence |
TGTAAA20NGA |
|
4 |
0 |
0 |
2392 |
0 |
|
Batch of SELEX experiment |
AF |
|
5 |
0 |
7 |
2392 |
3 |
|
Seed sequence |
ACCGGAARYN |
|
6 |
2392 |
5 |
8 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2392 |
134 |
7 |
982 |
|
SELEX cycle |
2 |
|
8 |
1148 |
84 |
1244 |
8 |
|
Number of repeats |
monomeric |
|
9 |
116 |
941 |
98 |
1451 |
|
Comment |
|
|
10 |
693 |
505 |
817 |
376 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
ETS1_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ETS1 |
|
1 |
201 |
113 |
2950 |
83 |
|
TF group |
ETS |
|
2 |
79 |
1911 |
42 |
1 |
|
Polypeptide used |
full |
|
3 |
262 |
1725 |
3 |
0 |
|
Ligand sequence |
TGTAAA20NGA |
|
4 |
6 |
0 |
3510 |
0 |
|
Batch of SELEX experiment |
AF |
|
5 |
1 |
0 |
3448 |
0 |
|
Seed sequence |
NCCGGAWRYRYWTCCGGN |
|
6 |
2152 |
0 |
12 |
21 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
1089 |
9 |
1 |
1486 |
|
SELEX cycle |
3 |
|
8 |
431 |
2 |
2721 |
20 |
|
Number of repeats |
dimeric |
|
9 |
10 |
600 |
310 |
1966 |
|
Comment |
|
|
10 |
1324 |
576 |
267 |
1 |
|
Representative
matrix |
no |
|
11 |
2 |
1788 |
3 |
133 |
|
|
|
|
12 |
365 |
4 |
0 |
2377 |
|
|
|
|
13 |
7 |
1 |
0 |
2811 |
|
|
|
|
14 |
2 |
1852 |
0 |
0 |
|
|
|
|
15 |
1 |
1847 |
2 |
2 |
|
|
|
|
16 |
25 |
78 |
3383 |
254 |
|
Source: |
|
|
17 |
60 |
550 |
2429 |
510 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
454 |
772 |
314 |
823 |
|
|
|