|
ESRRG_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ESRRG |
1 |
2868 |
50 |
268 |
55 |
|
TF group |
nuclearreceptor |
2 |
3068 |
50 |
72 |
4 |
|
Polypeptide used |
full |
3 |
24 |
0 |
3528 |
148 |
|
Ligand sequence |
TGACGA20NGCA |
4 |
6 |
0 |
3561 |
8 |
|
Batch of SELEX experiment |
AF |
5 |
195 |
11 |
285 |
2897 |
|
Seed sequence |
AAGGTCANNNNAAGGTCA |
6 |
16 |
3057 |
91 |
630 |
|
Hamming distance of sequences to seed |
2 |
7 |
2867 |
12 |
779 |
19 |
|
SELEX cycle |
4 |
8 |
578 |
796 |
363 |
1446 |
|
Number of repeats |
dimeric |
9 |
549 |
695 |
654 |
1340 |
|
Comment |
|
10 |
105 |
700 |
223 |
2215 |
|
Representative
matrix |
no |
11 |
453 |
1597 |
1242 |
188 |
|
|
|
12 |
2648 |
6 |
683 |
81 |
|
|
|
13 |
3134 |
92 |
40 |
0 |
|
|
|
14 |
31 |
2 |
3413 |
68 |
|
|
|
15 |
0 |
3 |
3614 |
4 |
|
|
|
16 |
163 |
3 |
360 |
2784 |
|
Source: |
|
17 |
9 |
3429 |
50 |
286 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
2960 |
33 |
445 |
11 |
|
|
|
|
|
|
|
|
|
|
|
|
ESRRG_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ESRRG |
1 |
1701 |
1 |
165 |
46 |
|
TF group |
nuclearreceptor |
2 |
1897 |
0 |
55 |
4 |
|
Polypeptide used |
full |
3 |
2 |
0 |
2190 |
82 |
|
Ligand sequence |
TGACGA20NGCA |
4 |
10 |
0 |
2179 |
18 |
|
Batch of SELEX experiment |
AF |
5 |
47 |
4 |
209 |
1848 |
|
Seed sequence |
RAGGTCANTCAAGGTCA |
6 |
1 |
2010 |
66 |
200 |
|
Hamming distance of sequences to seed |
2 |
7 |
1902 |
3 |
132 |
5 |
|
SELEX cycle |
4 |
8 |
425 |
462 |
659 |
406 |
|
Number of repeats |
dimeric |
9 |
571 |
898 |
106 |
1139 |
|
Comment |
|
10 |
92 |
2105 |
315 |
96 |
|
Representative matrix |
no |
11 |
1876 |
2 |
3 |
15 |
|
|
|
12 |
1889 |
8 |
1 |
0 |
|
|
|
13 |
5 |
3 |
2129 |
38 |
|
|
|
14 |
2 |
0 |
2191 |
1 |
|
|
|
15 |
154 |
2 |
67 |
1806 |
|
Source: |
|
16 |
0 |
2110 |
44 |
208 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
1740 |
0 |
261 |
7 |
|
|
|
|
|
|
|
|
|
|
|
|
ESRRG_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ESRRG |
1 |
3489 |
5974 |
2800 |
14909 |
|
TF group |
nuclearreceptor |
2 |
705 |
10009 |
4901 |
490 |
|
Polypeptide used |
full |
3 |
14909 |
0 |
603 |
195 |
|
Ligand sequence |
TGACGA20NGCA |
4 |
14909 |
12 |
34 |
5 |
|
Batch of SELEX experiment |
AF |
5 |
12 |
7 |
14909 |
298 |
|
Seed sequence |
TSAAGGTCAN |
6 |
0 |
17 |
14909 |
14 |
|
Hamming distance of sequences to seed |
1 |
7 |
472 |
41 |
844 |
14909 |
|
SELEX cycle |
4 |
8 |
7 |
14909 |
271 |
1280 |
|
Number of repeats |
monomeric |
9 |
14909 |
34 |
1561 |
60 |
|
Comment |
|
10 |
4305 |
3207 |
1181 |
6216 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |