|
EN1_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EN1 |
1 |
908 |
1000 |
981 |
402 |
|
TF group |
homeodomain |
2 |
393 |
1544 |
773 |
581 |
|
Polypeptide used |
DBD |
3 |
116 |
1803 |
65 |
1488 |
|
Ligand sequence |
TGTAGG20NGA |
4 |
3291 |
263 |
186 |
124 |
|
Batch of SELEX experiment |
Y |
5 |
3291 |
57 |
0 |
70 |
|
Seed sequence |
NNYAATTANN |
6 |
0 |
51 |
27 |
3291 |
|
Hamming distance of sequences to seed |
1 |
7 |
92 |
448 |
257 |
3291 |
|
SELEX cycle |
3 |
8 |
3291 |
42 |
49 |
271 |
|
Number of repeats |
monomeric |
9 |
933 |
670 |
1211 |
477 |
|
Comment |
|
10 |
494 |
1266 |
778 |
753 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
EN1_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EN1 |
1 |
58 |
27 |
19 |
1258 |
|
TF group |
homeodomain |
2 |
1060 |
15 |
113 |
44 |
|
Polypeptide used |
DBD |
3 |
1101 |
6 |
8 |
12 |
|
Ligand sequence |
TGTAGG20NGA |
4 |
30 |
16 |
46 |
1276 |
|
Batch of SELEX experiment |
Y |
5 |
75 |
38 |
147 |
1158 |
|
Seed sequence |
TAATTRSNYAATTA |
6 |
517 |
9 |
791 |
23 |
|
Hamming distance of sequences to seed |
2 |
7 |
50 |
450 |
745 |
33 |
|
SELEX cycle |
3 |
8 |
138 |
365 |
184 |
394 |
|
Number of repeats |
dimeric |
9 |
24 |
672 |
26 |
429 |
|
Comment |
|
10 |
993 |
103 |
76 |
80 |
|
Representative matrix |
yes |
11 |
1112 |
45 |
13 |
56 |
|
|
|
12 |
11 |
14 |
13 |
1263 |
|
Source: |
|
13 |
108 |
91 |
11 |
1203 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
1072 |
28 |
49 |
98 |
|
|
|
|
|
|
|
|
|
|
|
|
EN1_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EN1 |
1 |
427 |
1174 |
765 |
525 |
|
TF group |
homeodomain |
2 |
104 |
1328 |
5 |
1562 |
|
Polypeptide used |
full |
3 |
2891 |
99 |
71 |
0 |
|
Ligand sequence |
TGACCT20NCCA |
4 |
2891 |
28 |
0 |
0 |
|
Batch of SELEX experiment |
W |
5 |
0 |
0 |
0 |
2891 |
|
Seed sequence |
NYAATTAN |
6 |
57 |
483 |
162 |
2891 |
|
Hamming distance of sequences to seed |
1 |
7 |
2891 |
0 |
30 |
132 |
|
SELEX cycle |
3 |
8 |
689 |
683 |
1216 |
302 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
EN1_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
EN1 |
1 |
35 |
46 |
34 |
434 |
|
TF group |
homeodomain |
2 |
317 |
23 |
113 |
95 |
|
Polypeptide used |
full |
3 |
345 |
16 |
54 |
45 |
|
Ligand sequence |
TGACCT20NCCA |
4 |
51 |
60 |
107 |
428 |
|
Batch of SELEX experiment |
W |
5 |
55 |
57 |
132 |
411 |
|
Seed sequence |
TAATTRSNYAATTA |
6 |
192 |
21 |
233 |
20 |
|
Hamming distance of sequences to seed |
2 |
7 |
37 |
263 |
257 |
2 |
|
SELEX cycle |
4 |
8 |
79 |
114 |
117 |
137 |
|
Number of repeats |
dimeric |
9 |
19 |
230 |
23 |
243 |
|
Comment |
|
10 |
348 |
111 |
75 |
40 |
|
Representative
matrix |
no |
11 |
364 |
72 |
62 |
62 |
|
|
|
12 |
41 |
61 |
40 |
421 |
|
Source: |
|
13 |
72 |
51 |
67 |
395 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
348 |
21 |
80 |
56 |
|
|
|